| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2394 |
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| Symbol | |
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| ID | 4080547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2529876 |
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| End bp | 2531108 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010774 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_617436 |
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| Protein GI | 103487875 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.372512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.032408 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATG TTTCAACCGC GGCGCGCTGG CGCGCCGGAA TAATGGCCGC CGTCTTGATC
GCGGGCGGCG GAGGATATTG GCTGGGCCAG CGTGATAGCG ATGTCCCATC GAGCGCGGCG
AGCGATGAGG GGCGCAAAAT CCTTTATTAT TATGACCCGA TGTTTCCGAA CCAGAAGTTC
GAAAAACCCG GCAAATCGCC GTTCATGGAT ATGGAGCTTG TACCCAAATA TGCCGACGAA
GGCGGCGCGA ACGGCGCTCC TTCAGGCATT TCGGTCGATC CGTCGGCGAT GCAGAATCTG
GGAATGCGCG TCGTCGCCGC CGAAACGGGC AGCCTCGCGG CGAGTTTCGA CGTCACCGGC
ACGATCGACT TCAACGAACG CGACGTTGCA ATCGTGCAGG CCCGCTCGGG CGGCTTCGTC
GAGCGCGTCT ATCGGCTGGC CCCGGGCGAT GTCATTCGTG CCGGGACGCC GATCGCCGAT
GTGCAATCGC CCGAATGGGG CGGCGCACAG ACCGAATATC TGAGCGTCAA GCGGCTCGGC
AAGCCCGAAC TGACGGCGGC GGCGCGCCAG CGGCTGCGGC TGATGGGCAT GGCCGACACG
GTCATCGCCC AGGTCGATCG CACGGGGCGG ACGAGCGGCA CGGTGACGAT CCGGTCGCCG
ATCGGCGGCG TGGTCCGGTC GCTCGACGCG CGCGCCGGAG TGACGCTGGC GCAGGGGCAA
ACGCTTGCGG AGGTCTCGGG ACTGGGCAGC GTCTGGCTCC ACGCCGCCTT GCCCGAGGCG
CAAGCCGCGT CGGTGCGGGT CGGGCAACGC GCGGTCGCGA CGCTCACCGC CTTTCCCGGT
GAGACGTTCG GCGGGCGTGT CATCGCGATC CTGCCAACAA TACAAAGCGA CAGCCGGACG
CTCACCGTCC GCATCGAGCT TCCCAATCGT GGCGGCCGGT TGCGCCCCGG CATGTTCGCC
AATGTCACGC TGGGTGGCGA CGCCGAACCG GCGCTGTTGG TGCCGAGCGA GGCGGTCATC
CGCACCGGCA CCCGCAGCAT CGTCATGCTC GCCACGGGCG ATGGGCGCTA TCATCCGGCC
GAAGTGCAAA CCGGGCGCGA GGGCGATGGC AAGACCGAAA TCTTGCGCGG GCTGACGGTT
GGCGAAAAAA TCGTCGCCTC GGGTCAGTTC CTGCTCGATT CCGAAGCAAG CCTGACCGGC
ATCGCCGTCC GCCCGCTTGG TGACGCGAAA TGA
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| Protein sequence | MSDVSTAARW RAGIMAAVLI AGGGGYWLGQ RDSDVPSSAA SDEGRKILYY YDPMFPNQKF
EKPGKSPFMD MELVPKYADE GGANGAPSGI SVDPSAMQNL GMRVVAAETG SLAASFDVTG
TIDFNERDVA IVQARSGGFV ERVYRLAPGD VIRAGTPIAD VQSPEWGGAQ TEYLSVKRLG
KPELTAAARQ RLRLMGMADT VIAQVDRTGR TSGTVTIRSP IGGVVRSLDA RAGVTLAQGQ
TLAEVSGLGS VWLHAALPEA QAASVRVGQR AVATLTAFPG ETFGGRVIAI LPTIQSDSRT
LTVRIELPNR GGRLRPGMFA NVTLGGDAEP ALLVPSEAVI RTGTRSIVML ATGDGRYHPA
EVQTGREGDG KTEILRGLTV GEKIVASGQF LLDSEASLTG IAVRPLGDAK
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