| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2361 |
|---|
| Symbol | |
|---|
| ID | 4080762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2486817 |
|---|
| End bp | 2487902 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638010741 |
|---|
| Product | phosphoribosylaminoimidazole carboxylase ATPase subunit |
|---|
| Protein accession | YP_617403 |
|---|
| Protein GI | 103487842 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0026] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) |
|---|
| TIGRFAM ID | [TIGR01161] phosphoribosylaminoimidazole carboxylase, PurK protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.158275 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGTCTC CCGGTTCGAC GATCGGCATC CTCGGCGGCG GCCAGCTCGG GCGGATGCTT
GGCCAGGCGG CGGCGCAGCT TGGTTACCGC GTCCACATCT ATGCCCCCGA CCGCGAAAGC
GTCGCCGCCG ATGTCGCCGC GCACCACACG CGGGCGGCCT GGGACGACGA CCCGCGCCTC
GCGGCCTTTG CCGCGGCGTG CGACGTTGTC ACCTTCGAGT TTGAAAATGT CCCCGTCGAC
ACGGTGCGCT TCCTGTCGGG GCATGTCGCG GTGCGCCCCG GCGCCGCGGC GCTGGAGATC
GCGCAGGACC GGCTCGCCGA AAAGCGATTT GTCGTGGGAC TCGGCGGCCG TCCGGCGCCC
TTTGCCGCGG TGCCCGACCG CCCGGCGCTC GACACGGCGC TGGGCGAAGT CGGCGCGCCC
GCGATCCTGA AAACGGTGCG TATGGGCTAT GACGGCAAGG GGCAGGCGCG GCTTGCGACG
GCGGCCGACG CCGACGCGGC GTGGGACGCC ATCGACCGCC ACGCCGCGGT GCTCGAAGGT
TTCGTGACCT TTACGCACGA GTTTTCGGCG ATTCTCGTGC GCGGGATCGA CGGCGAGGTG
CGCTTCTGGG ACAGCCCGGT CAATGTCCAT GCGAATGGCA TCCTTGCCAG TTCCAGCCTG
CCGCCGCCGC GCGAGGTGCT GGGTCAGCAG GAGGAGGCGC GCGGGCTGAT GGCGCGGATC
GCTGCCGAAC TCGACTATGT CGGGGTGCTC ACCGGCGAGT TTTTCGCCAC CGCCGACGGC
CCGGTGTTCA ACGAAATGGC GCCGCGCGTC CACAACAGCG GCCACTGGAC GATCGAGGGT
GCCGTGACGA GCCAGTTCGA GAATCATATC CGCGCCGTCG CCGGGCTGCC GCTCGGCAGC
ACGGCGACCA CGGCGCTACC GGTCACGATG CGCAACCTGA TCGGTGCAGA GATTGCCACC
GTCCCCGCGC TGCTCGCCGA CGACGCCGCG CATGTGCATC ATTATGGCAA GGCGGCGGTG
CGCGACGGCC GCAAGCTGGG CCATGTCACG TGGGTCGGCT TTGGGGTGGG AAACACACCG
GCATGA
|
|---|
| Protein sequence | MLSPGSTIGI LGGGQLGRML GQAAAQLGYR VHIYAPDRES VAADVAAHHT RAAWDDDPRL
AAFAAACDVV TFEFENVPVD TVRFLSGHVA VRPGAAALEI AQDRLAEKRF VVGLGGRPAP
FAAVPDRPAL DTALGEVGAP AILKTVRMGY DGKGQARLAT AADADAAWDA IDRHAAVLEG
FVTFTHEFSA ILVRGIDGEV RFWDSPVNVH ANGILASSSL PPPREVLGQQ EEARGLMARI
AAELDYVGVL TGEFFATADG PVFNEMAPRV HNSGHWTIEG AVTSQFENHI RAVAGLPLGS
TATTALPVTM RNLIGAEIAT VPALLADDAA HVHHYGKAAV RDGRKLGHVT WVGFGVGNTP
A
|
|---|
| |