| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2296 |
|---|
| Symbol | |
|---|
| ID | 4080792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2422439 |
|---|
| End bp | 2424793 |
|---|
| Gene Length | 2355 bp |
|---|
| Protein Length | 784 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638010675 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_617338 |
|---|
| Protein GI | 103487777 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAGCC TGCCGACCGA CCTGACTGCC GCCGACGTCA TTCCCGCGCG GACCCTGCTG
GGGCTGGGGC CGCGGGATCA GGACATCGGA AACCTCCACC AGCTTCAGCT CGCGCCGCTT
CGCGGCCGCG GATCGCTGCG TCTGGCGATG GGCATCGGCA TGGCGCTCGT CGCCTTTCTG
ACGATGCTCC ACCATGTCGC GCTGCCGGTC GCGGGCGGCT GGCTCGCCGG GTCGCTGCTT
TTCAGCCTGT GGTCCTACAG CCGGTTCCGC AACCTGCCGC TCGGCGATCC GAAACTTCCG
GGAAGCGCCG AATATCGCAT GTGCAACCGG CACGCGCTCT ATTCGGCGCT GCTCTGGGGC
CTGCCCTTCT GGCTTCAGGG GCTCGCGCCC GGCGTCGACC ATATATTGTC GATGTGGACG
ATCGCGGTGC TGATGATGCT GACGCTGGCG ATCGTCGCGC ACAGCGTTCC GCTCGCCTGC
GCCCTGTTCA TCATGCCTGT CTCGCTGTCG GCGGCAGCGG CGCTGGGGCT TGCCGGCGCG
CCGGAAATCG CCGCGGTCAC GCTCGTCGCG GGCATCCTGC TTTCGGCCTT CTGCGTCCGC
TTCGCGCAAA TCCATATCCG CTCGCGCCGC GCGGAAGAGA CGCTGCACGA AAAGAGCGAG
ACGGTCAGCC TGCTGCTGCG CGAGTTCGAG GAAACCTCGG CCGACTGGCT GTGGCAGACC
GACAGCAACC GCCGCCTCGT CCACGTCTCG CCGCGCCTCG CCTATGCGCT CGGCGGCACC
GCCGAGGGGC TTGAAGGCAT TCCGCTGCTG CAGGCGCTGT CGGGCGACGC TTGGGAAACC
GGGCTGTTCC CCAAGAGCCT GCACGACATG GCCGAACGGA TGAAGCGGCG CGAGAGCTTC
TCGAACCTGA TCGTTCCCGT GTCGATCGAC GGTCGTCCGC GCTGGTGGGA ATTGTCGGCG
TCGCCGCGGC TCGACGAATC GGGCAGGTTT CTGGGGTTTC GCGGGGTCGG GTCCGACGTC
ACCGAACAGC GCGCGACCGC CGAACAAATC GCCCGGATGG CGCGATTCGA CAATCTCACC
GGTCTGCCCA ACCGGCTCAG CCTCAACGAG GATCTCGCGC GGGCGCTCAC CCGCGCCATC
GAGGCGAAGT CGCGCTGCGC GCTGCTGATG ATCGACCTCG ACCGCTTCAA GGCGGTCAAT
GATACGCTGG GGCATCCCGT CGGCGACAAA TTGCTCGCGC AGGTCGCCGC GCGCCTCAAA
GGGTTGATGG AGCGCGGCAT GACCTGCGGC CGCCTTGGCG GCGACGAGTT TGCCGTCGTG
CTGCACAATC TCTCCTCGCC CGCCGTCGCC GAGGATCTGG CGCAGCGGAT CATCGCGACG
ATCAGCCGGC CCTATGTCGT CGACAATCAT CAATTGTTCG TCGGCGCCAG CGTCGGTTAT
GCGATCGGCC CGACCGACGG CGCGACGGTC GAGACGCTCA CCCGCAACGC CGACCTGGCG
CTCTATAAAT CGAAGGACCG CGGCGGCAAT GTCGTCGCCG CCTATGTCGC CTCGCTCCAC
GCGCAGGCCG AGGAACGGCG CGTGATGGAG CAGGAATTGC GCGGCGCGCT GGAACGCGGC
GAGTTCGAGC TTTATTACCA GCCCGTCGTC ACCGCCGCCG ACGGCACGCT CAACGGCTTC
GAGGCGCTGA TCCGCTGGAC CAACCACAAG CTCGGCAATG TCTCGCCCGG CCGCTTCATC
CCGATCGCCG AGGACGCGCG CCTCATCTCG CCGATCGGCG AATGGGTGCT GCGCACCGCG
TGCCACGAGG CGATGAAATG GCCGTCGAAC CTGAAGGTCG CGGTCAACGT GTCGGCCGAC
CAGCTCACCG ATCCCAGCTT CGCCTCGGTC GTCGTTTCGG CGCTCGCACA GAGCGGGCTT
TCGCCGCAAA GGCTGGAGAT CGAAGTCACC GAAAGCGTCT TCCTGCGCGA CGGCGGCGGC
GCGGCGCAGC TGCTCGACCA GCTCATCGGG CTGGGCATCC GGCTGTCGCT CGACGATTTC
GGGACGGGCT ATTCCTCGCT CGGCTATCTG CGCAAGACCC AGTTCTCGAC GATCAAGGTC
GACCGCAGCT TCGTCGTCGG CGCCGCGAAG GGCAGCATCG AATCGATCGC GATCATCCGC
GCGGTCGTCG CGCTCGCCGA CAGCCTCGGC ATGTCGACCA CCGCCGAGGG TGCGGAGACC
GAGCTCGAGG TCGAAACGCT GCGCAGCTTC GGCTGCTCGA ACATCCAGGG CTATTATTAC
GGGCGCCCGA TGCCCGCGAG CGATGTGCTG ACGCTGTTCC GCCGCCCCGA CGACGTGGCG
ATCGCCGCGG CGTGA
|
|---|
| Protein sequence | MKSLPTDLTA ADVIPARTLL GLGPRDQDIG NLHQLQLAPL RGRGSLRLAM GIGMALVAFL
TMLHHVALPV AGGWLAGSLL FSLWSYSRFR NLPLGDPKLP GSAEYRMCNR HALYSALLWG
LPFWLQGLAP GVDHILSMWT IAVLMMLTLA IVAHSVPLAC ALFIMPVSLS AAAALGLAGA
PEIAAVTLVA GILLSAFCVR FAQIHIRSRR AEETLHEKSE TVSLLLREFE ETSADWLWQT
DSNRRLVHVS PRLAYALGGT AEGLEGIPLL QALSGDAWET GLFPKSLHDM AERMKRRESF
SNLIVPVSID GRPRWWELSA SPRLDESGRF LGFRGVGSDV TEQRATAEQI ARMARFDNLT
GLPNRLSLNE DLARALTRAI EAKSRCALLM IDLDRFKAVN DTLGHPVGDK LLAQVAARLK
GLMERGMTCG RLGGDEFAVV LHNLSSPAVA EDLAQRIIAT ISRPYVVDNH QLFVGASVGY
AIGPTDGATV ETLTRNADLA LYKSKDRGGN VVAAYVASLH AQAEERRVME QELRGALERG
EFELYYQPVV TAADGTLNGF EALIRWTNHK LGNVSPGRFI PIAEDARLIS PIGEWVLRTA
CHEAMKWPSN LKVAVNVSAD QLTDPSFASV VVSALAQSGL SPQRLEIEVT ESVFLRDGGG
AAQLLDQLIG LGIRLSLDDF GTGYSSLGYL RKTQFSTIKV DRSFVVGAAK GSIESIAIIR
AVVALADSLG MSTTAEGAET ELEVETLRSF GCSNIQGYYY GRPMPASDVL TLFRRPDDVA
IAAA
|
|---|
| |