| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2230 |
|---|
| Symbol | |
|---|
| ID | 4080301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2343349 |
|---|
| End bp | 2344311 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638010608 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_617272 |
|---|
| Protein GI | 103487711 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01763] malate dehydrogenase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGCA AGAAGATCGC ATTGATCGGA GCCGGGAATA TCGGCGGAAC GCTGGCGCTG
CTCGCCGCGC AGAAGGAACT CGGCGATGTC GTCCTGTTCG ACGTCGTCGA AGGCGTGCCG
CAGGGCAAGG CGCTCGACCT GTCGCAGGTC GGCCCGATCG CGGGCTTTGA CGCAAAGATC
AGCGGCTCGA ACGATTATGC CGACATCGCG GGTGCCGACG TCATCATCGT CACTGCGGGT
GTCGCTCGCA AGCCGGGGAT GAGCCGCGAC GATCTGCTCG GCATCAACCT GAAGGTCATG
AAGGCCGTGG GCGAGGGCAT CAAGGCCAAC GCCCCCGACG CCTTTGTCAT TTGCATCACC
AATCCGCTGG ACGCGATGGT TTGGGCTCTC CGTGAGTTCT CGGGGCTGCC GCACAGCAAG
GTCGTCGGCA TGGCCGGCGT GCTCGATTCG GCGCGCTTCA GCCACTTCAT CGCCGACGAA
TTCGACGTGT CGGTGAAGGA TGTGAACACC TTCGTGCTCG GCGGTCATGG CGACACGATG
GTTCCCGTCG TGCGTTATTC GACCGTCAAC GGCATCCCCG TTCCCGACCT CGTCAAGATG
GGCCTGTCGA GCCAGGACAA GATCGACGCG ATCGTCAAGC GCACGCGCGG CGGCGGCGGC
GAAATCGTCG CGCTGCTCGG CACCGGCTCG GCCTTCTATG CGCCCGCCGC CAGCGGCATC
GCGATGGCCG AAGCCTATCT GGGCGACCAG AAGCGCATCC TGCCCTGCGC CGCCTATGTC
GATGGTCAGT ATGGTGTTGA CGGCCTCTAT GTCGGCGTGC CGGTGATGAT CGGTGCGGGC
GGGGTCGAGA AGATCGTCGA GATCGAACTC GACGACGCCG ACAAGGCGGG GCTTCAGGTT
TCGGTCGACG CGGTCAAGGA ACTGTTGGAA GCTTGCAAGA AGCTCGATCC CAGCCTCGCG
TAA
|
|---|
| Protein sequence | MGRKKIALIG AGNIGGTLAL LAAQKELGDV VLFDVVEGVP QGKALDLSQV GPIAGFDAKI
SGSNDYADIA GADVIIVTAG VARKPGMSRD DLLGINLKVM KAVGEGIKAN APDAFVICIT
NPLDAMVWAL REFSGLPHSK VVGMAGVLDS ARFSHFIADE FDVSVKDVNT FVLGGHGDTM
VPVVRYSTVN GIPVPDLVKM GLSSQDKIDA IVKRTRGGGG EIVALLGTGS AFYAPAASGI
AMAEAYLGDQ KRILPCAAYV DGQYGVDGLY VGVPVMIGAG GVEKIVEIEL DDADKAGLQV
SVDAVKELLE ACKKLDPSLA
|
|---|
| |