| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2206 |
|---|
| Symbol | panB |
|---|
| ID | 4080164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2318435 |
|---|
| End bp | 2319298 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638010584 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_617248 |
|---|
| Protein GI | 103487687 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.173698 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACGC TCCCCAAAAC GCTCACCCTC GACACCTCCA CGAGCCGCGC AAATCCGACG
CCGCAGCCGA TGAAGCGCCT GACGGTTCCG CGCATCCGCC AGCGCAAGGG GGGCGAACCG
ATCGTGATGC TCACCGCCTA TACGGTGCGC ATGGCGCAGT TGCTCGACCC GCATTGCGAC
ATGCTGCTGG TGGGCGATTC GCTCGCGCAG GTGATCTATG GCCTGCCGCA CACCGTCGGG
GTGACGATGG AGATGATGGC GCTGCACGGC GCCGCCGTGG TGCGCGGCAG TTACCATGCC
GCGGTGATCG TCGACATGCC CTTCGGCAGC TATGAGGGCA GCCCGCAGCA GGCCTTTGAC
AACGCCGCGC GACTGCTCAA GGAAACCGGC GCCGCGGCGG TCAAGGTCGA GGGTGGCAAG
GTGCTTGCTC CGACGATCGA GTTCCTGACC CAGCGCGGCA TTCCGGTGAT GGGGCATGTC
GGGCTGACCC CGCAGGCGGT GAACATCCTT GGCGGTTATG GCGTGCGCGG CAAGAGCGAG
GAGGAAGCGC GCTCGATCGT CGAGGATGCG GTTGCGGTCG CCCAGGCCGG CGCCTTTTCG
ATCGTCATCG AGGGCGTACT CGAATCGATC GCGATCGAAA TCACCAACAA GGTCGCATGT
CCGACGATCG GCATCGGCGC ATCGGCGCAG TGCGATGGCC AGGTGCTCGT CACCGACGAC
ATGCTGGGCA TGTTCGAGCG TGTACCCAAG TTCGTCAAAC GCTATCGGGA CATGGCGGGC
GTCGTCAGCG GCGCCGTGCA GGATTATGCG GACGAAGTCA GGTCCCGTTC ATTCCCGACC
GAGGATCAGA TCTACGCGGG CTGA
|
|---|
| Protein sequence | MSTLPKTLTL DTSTSRANPT PQPMKRLTVP RIRQRKGGEP IVMLTAYTVR MAQLLDPHCD
MLLVGDSLAQ VIYGLPHTVG VTMEMMALHG AAVVRGSYHA AVIVDMPFGS YEGSPQQAFD
NAARLLKETG AAAVKVEGGK VLAPTIEFLT QRGIPVMGHV GLTPQAVNIL GGYGVRGKSE
EEARSIVEDA VAVAQAGAFS IVIEGVLESI AIEITNKVAC PTIGIGASAQ CDGQVLVTDD
MLGMFERVPK FVKRYRDMAG VVSGAVQDYA DEVRSRSFPT EDQIYAG
|
|---|
| |