| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2156 |
|---|
| Symbol | |
|---|
| ID | 4080190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2266655 |
|---|
| End bp | 2267974 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638010534 |
|---|
| Product | recombination factor protein RarA |
|---|
| Protein accession | YP_617198 |
|---|
| Protein GI | 103487637 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.562236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGCG ATCTCTTCGG TGAGGAAACA CCGACCGCGC GGCAGGACGC GGCGACCGGC
GCCGCGCCGC TCGCTGAGCG GCTGCGGCCG CGCTCGCTGG CTGAGGTCGT CGGACAGGAG
CATCTGACGG GCACCGACGG CGCGATCGGG CGCATGGTCG CTGCGGGCCA ATTGTCGTCG
ATCATCCTGT GGGGGCCGCC GGGCACGGGC AAGACGACCA TCGCGCGCCT TCTGGCCGAG
GCGGTGAAGA TGCGTTTCGC CGCGCTGTCG GCAGTTTTTT CGGGCGTCGC CGATTTGCGC
CAGGCCTTTG CCGATGCCGA AAAAATGGCT GCGACGGGCA AACGGACCCT GCTCTTCGTC
GACGAGATCC ATCGCTTCAA CCGCGCGCAA CAGGACGGCT TCCTGCCCTA TGTCGAGCGC
GGCACCGTCG TGCTCGTCGG CGCGACGACG GAGAACCCCA GCTTTGCCCT GAACGCCGCG
CTGCTCAGCC GCGCGCAGGT GCTGGTGCTG AACCGGCTTG GCGATGCTGC GCTCGAAACG
CTGATCGACC GCGCCGAAGC CGAAACCGGC CGCGCGCTGC CGGTGACGAC CGAAGCGCGC
GCCGCGCTCG TCGCCAGCGC CGACGGCGAC GGGCGGTTCC TGCTCAATCA GGTCGAAACG
CTGTTTTCGG TGACGCTCGA TGCGCCGCTC GATCCGGCCG AACTTGCGCA ATTTCTCCAC
CGCCGGATGC CCGTCTACGA CCGGGATCGC GACGGCCACT ATAATCTCAT TTCGGCGCTG
CATAAGGCGG TGCGCGGCTC CGACCCGCAG GCGGCGCTCT ACTGGCTTGC GCGGATGCTC
GTTGCGGGCG AGGAACCGCT TTATGTGCTC CGCCGCCTCA CCCGCCTTGC GAGCGAGGAC
ATCGGCCTCG CCGACCCGCA GGCGCTGGTG CAGTGCCTCG CCGCAAAGGA CGCCTATCAG
TTCCTCGGTT CGCCCGAAGG CGAGCTCGCG ATCGTGCAGG CGTGCCTCTA TCTCGCCACC
GCGCCCAAAT CGAACGCCGC CTATGCCGCG CAGAAGGCGG CGTGGAGCGC GGCACGCGAG
ACCGGCAGCC TCGCGCCGCC CGCGAACATC CTCAACGCCC CGACGAAGCT GATGAAGGAT
CTGGGCTATG GCGCGGGCTA CAGCTATGAC CATGACGCTC CCGACGGTTT TTCGGGCGAC
AATTATTGGC CTGACGGCAT GGCGCCGGGC GACTATTACC GCCCGGTCGA TCGCGGCTTT
GAAAAACGGA TTGCCGAGCG CATGGCCTGG TGGGACGCGC AACGACGGTC AGGGCGGTGA
|
|---|
| Protein sequence | MAGDLFGEET PTARQDAATG AAPLAERLRP RSLAEVVGQE HLTGTDGAIG RMVAAGQLSS
IILWGPPGTG KTTIARLLAE AVKMRFAALS AVFSGVADLR QAFADAEKMA ATGKRTLLFV
DEIHRFNRAQ QDGFLPYVER GTVVLVGATT ENPSFALNAA LLSRAQVLVL NRLGDAALET
LIDRAEAETG RALPVTTEAR AALVASADGD GRFLLNQVET LFSVTLDAPL DPAELAQFLH
RRMPVYDRDR DGHYNLISAL HKAVRGSDPQ AALYWLARML VAGEEPLYVL RRLTRLASED
IGLADPQALV QCLAAKDAYQ FLGSPEGELA IVQACLYLAT APKSNAAYAA QKAAWSAARE
TGSLAPPANI LNAPTKLMKD LGYGAGYSYD HDAPDGFSGD NYWPDGMAPG DYYRPVDRGF
EKRIAERMAW WDAQRRSGR
|
|---|
| |