| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2109 |
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| Symbol | |
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| ID | 4080084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2216760 |
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| End bp | 2218472 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010485 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_617151 |
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| Protein GI | 103487590 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0707223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGAAAG GTCGCACAAA ACCCGCTGTT ATGCCTATTG ATCGAACCGG CGAAGACCGG
CCCTTGCTGT TTGTCGGCTG GATCGACGCG CTGCCCGTTC CGGCGGCGCT GGTCAGGCCG
ATGGCGCGCG GCAATTTCCG GCTCCACGCG AGCAATGCCG CCTTCGACCG ACTGAAGCTG
TCGCCGGTCG GCGCCGACGC GCCGATCGAG CTTCTGCGCG CAGTCGAACG CGCATCGCAG
CATCCCGACG AGGTGCAGGA GTTTTCGTGC CAGCTCGGCG AGGGACCGGC GGCGCGCGAC
CTGCGCGGAC ATATCGGCCC GCTGCCCACC GAAACGGATG ACGACGGGCT GTTCCTGCTG
ACGCTGATCG ATCGCACCCA GGAAATGATG ACCGAGCGCA ATCTGCGCCG CGAGCTGGTG
TCCGACAGCC TGACCGGCCT GCCCAACCGC GCCGGGTTCG AGGAGCTGGT CGAACAGCGG
GCGCACCGCG ATGCGCCGGG CGCCGATCAC GCCATACTGC TGCTCGACCT CGCGCGCTTT
TCGCGCATCA ACGAACATAT CGGCCCGATG GCGGGCGACG AGCTGATCAT CACCGTCGCA
CGGCGGTTGA AATCGAGCCT GCGCAGCGGC GACATACTGG CGCGCACCGG CGGTGACGAA
TTCGCCATTT CGACACGAAT CGCGGGCGGG CGCGCCGATG TGCGCGAAAT GGCGCGGCGC
ATCCGCGGCT GTTTCGACCA TCCCTTTCGT ATCGGCGAAC TGAAGGTCAG CGTCGATTGC
GCGCTCGGCT GTTCGATCCA GCCGACCAGC GAGATCGACG TCGCCAACCA GATCCGCCAC
GCGCAGATCG CGCTCAAGCG GGCGAAGCAG ACCGACCGCA TCGAAATCTA TGAACCCGAA
GCGGCGATGC TGTCGGACAA TCGTTTCGGG CTCGAGACCG AACTGCGCAA CGCGATCGAG
GAAGACCGGC TGCATCTCGC CTTCCAGCCG CTCATCGAGA TGGCGAGCGG GCGCGTCGCG
GGGTTCGAGG CGCTCGCGCG CTGGGACAAT AGCAGCGGGG TCGCGGTGTC ACCGACCGAA
TTCATTCCGA TCGCCGAGGA TTCGGGGCTG ATCGTCCCGC TGGGCCAATG GGCGATCGGC
AAGGCCGCGG CGGTGCTCGC CGACTGGGAC CGGCAGAATG GCGGGCAGGT CGTCAACGCC
TATTTCTCGG TCAATGTCTC GGCGATCCAG CTGGTGCGTG ACGACGTCGC GGGGGTGGTT
CGCCAGGCGC TCCAAAAGCA TGGCATCGGC GGCGAGCGGC TGATGATCGA GCTGACCGAA
AGCGCGATCA TCGGCGATCC CGACCTGGCG CTGTCGGTGC TGCGCGAACT GAAGGCACTC
GACGCGCGCG TCGCGATGGA CGATTTCGGC ACCGGCTATT CGAACCTTGC CTATCTTCAG
CGGCTGCCGA TCGACGTGCT CAAGATCGAC CGCAGCTTTG TCGAACATAT GGTCGACGAC
CGCGACAAGG TGGCGATCGT CCGCACGATC CAGAGCCTCG CCGAAGTGCT GGGGATGAAG
ACCACCGCCG AGGGGGTCGA GACAACCGAT CAGGCGCGGC TGCTGTCGGC GCTCGGCTGC
GACTTCGGGC AGGGCTATCT GTTCGCGCGG CCGATGGATG GCAAGGCGGC GCTCGATTAC
TGGCGTCAGT CGCTGACGCG GCCGATCTTC TGA
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| Protein sequence | MGKGRTKPAV MPIDRTGEDR PLLFVGWIDA LPVPAALVRP MARGNFRLHA SNAAFDRLKL
SPVGADAPIE LLRAVERASQ HPDEVQEFSC QLGEGPAARD LRGHIGPLPT ETDDDGLFLL
TLIDRTQEMM TERNLRRELV SDSLTGLPNR AGFEELVEQR AHRDAPGADH AILLLDLARF
SRINEHIGPM AGDELIITVA RRLKSSLRSG DILARTGGDE FAISTRIAGG RADVREMARR
IRGCFDHPFR IGELKVSVDC ALGCSIQPTS EIDVANQIRH AQIALKRAKQ TDRIEIYEPE
AAMLSDNRFG LETELRNAIE EDRLHLAFQP LIEMASGRVA GFEALARWDN SSGVAVSPTE
FIPIAEDSGL IVPLGQWAIG KAAAVLADWD RQNGGQVVNA YFSVNVSAIQ LVRDDVAGVV
RQALQKHGIG GERLMIELTE SAIIGDPDLA LSVLRELKAL DARVAMDDFG TGYSNLAYLQ
RLPIDVLKID RSFVEHMVDD RDKVAIVRTI QSLAEVLGMK TTAEGVETTD QARLLSALGC
DFGQGYLFAR PMDGKAALDY WRQSLTRPIF
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