| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2100 |
|---|
| Symbol | |
|---|
| ID | 4080075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2208341 |
|---|
| End bp | 2208919 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638010476 |
|---|
| Product | nuclease (SNase-like) |
|---|
| Protein accession | YP_617142 |
|---|
| Protein GI | 103487581 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGGC GCCCCTCTCC TCCCGCCCGG CTGGTCTGGC GCAAACGGCT TCGCGCCGCC
GGGGCGGCGC TGCTGCTCGC GGGGCTGGCG TTCGCTGCCT GGTTCGCGCG GCCGTTGCCC
ACCCGATCGG TGCCACTGGT GCAGGTGATC GACGGCGACA GCCTGATCGT CCGACACGAT
GGCGCGCGCG TGACGATCCG GCTGACAGGG ATTGATGCGG TCGAATATCG ACAGGCCTGC
GCGCGCGCCG GAACCCCATG GCCGTGCGGG CGCGAAGCGC GGCAGGCGCT CGAGCGGCTT
GCGGGGCGCG GGCCGCTGCA CTGCACGCTG TCGTCGAGGG ACCGATATGG CCGTACGCTC
GCGAGCTGCC GGACCGCGCC CTTTCCCGAA GGCGTCGATC TGGGCGCCGA AATGGTCCGG
CAGGGTTGGG CGGTTGCGAG CGACAGCGAC TATCGCAGCG AAGAAGCCGC TGCCGAGGCT
GCCCGGCGCG GCATCTGGCA GGGCGAGTTT AGCGCGCCCG CCGACTGGCG CGTCGCGCAC
GAGCGCCCCG CGAAGGCCGA CGCGATCCCC GGCGCATAG
|
|---|
| Protein sequence | MMRRPSPPAR LVWRKRLRAA GAALLLAGLA FAAWFARPLP TRSVPLVQVI DGDSLIVRHD
GARVTIRLTG IDAVEYRQAC ARAGTPWPCG REARQALERL AGRGPLHCTL SSRDRYGRTL
ASCRTAPFPE GVDLGAEMVR QGWAVASDSD YRSEEAAAEA ARRGIWQGEF SAPADWRVAH
ERPAKADAIP GA
|
|---|
| |