| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2096 |
|---|
| Symbol | |
|---|
| ID | 4080070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2202830 |
|---|
| End bp | 2205505 |
|---|
| Gene Length | 2676 bp |
|---|
| Protein Length | 891 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638010471 |
|---|
| Product | aconitate hydratase 1 |
|---|
| Protein accession | YP_617138 |
|---|
| Protein GI | 103487577 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1048] Aconitase A |
|---|
| TIGRFAM ID | [TIGR01341] aconitate hydratase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.931453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CGGGCAACGA CACGCTGGGA ACCCGCTCGA CGCTGGACGT CGGCGGCAAG
AGCTACGCTT ATTATTCGCT CGACAAGGCC GCGGCCAAGC TGGGCGATGT CTCGCGCCTG
CCGTTTTCGA TGAAGGTGCT GCTCGAAAAC CTGCTGCGCT TCGAGGATGG CGGCTTCACC
GTGTCGACCG ATGATGTGCA GGCGCTCGTC GACTGGCAGA AGGACCCGCA TTCGAACCGC
GAGATTCAAT ATCGCCCCGC GCGCGTCCTG CTTCAGGATT TCACCGGCGT TCCTTGTGTG
GTCGACCTCG CCGCGATGCG CGATGCGATC GCGAAGCTGG GCGGCGACAC GTCGAAGATC
AACCCGCTCG TCCCCGTCCA CCTCGTCATC GACCACTCGG TGATGGTCGA CGAGTTCGGC
CATCCCAAGG CGTTCGAGCA GAATGTCGAG ATCGAATATT ATCGCAACGG CGAACGCTAT
GACTTCCTGA AATGGGGGTC GAAAAGCCTC GACAATTTCA AGGCAGTGCC GCCGGGCACC
GGCATCTGCC ACCAGGTCAA CCTCGAACAT ATCGCGCAGG CGGTGTGGTC GAGCGAGGAT
GCGTCGGGCG CGCTCGTCGC CTATCCCGAC ACCTGCGTCG GCACCGACAG CCACACGACG
ATGATCAACG GCCTCGGCGT GCTCGGCTGG GGCGTCGGCG GGATTGAAGC GGAAGCGGCG
ATGCTCGGCC AGCCCGTGTC GATGCTCATC CCCGAAGTCG TCGGCTTCAA GCTCACCGGC
AAATTGAAGG AAGGCGTCAC CGCGACCGAC CTCGTGCTCA CCGCGACGCA GATGCTGCGC
GCCAAGGGCG TCGTCGGGCG CTTCGTCGAA TATTATGGCC CCGGCCTCGC GTCCTTGAGC
CTCGCCGACC GCGCGACGCT CGCGAACATG GCGCCCGAAT ATGGCGCGAC CTGCGGCTTT
TTCGGGATCG ACGACAAGAC GCTCGATTAT ATGCGCCTCA CCGGTCGCTC CGACGAAAAT
ATCGCGCTGG TCGAAGCCTA TGCCAGGGCG CAGGGGCTGT GGCTGGCGGC CGACATGCCC
GATCCGGTGT TCACCGACAC GCTCGAGCTC GACATGGGCA GCGTCGTCCC CAGCCTCGCC
GGGCCGAAGC GGCCGCAGGA CAAGGTCGTG CTCACCGAAG TCGACGATGT GTTCAACGCC
GACCTCAGGA ACGTCTATGG CAAGGACGCG CCGGAGCGCG TGCCGGTCGC GGGCAGGGAG
CATGATATCG GCGACGGCGA CGTGGTGATC GCGGCGATCA CCAGCTGCAC CAACACCTCG
AACCCCGGCG TGATGGTCGC CGCGGGCCTC GTCGCCAAGA AGGCGAACGA GCGCGGGCTG
AAGCCCAAGC CGTGGGTCAA GACCTCGCTC GCGCCGGGGT CGCAGGTCGT CACCGACTAT
CTGGTCAAGG CGGGGCTGCA GGACCATCTC GACGCGGTCG GCTACAATCT CGTCGGCTAT
GGCTGCACCA CCTGCATCGG CAATTCGGGG CCGCTCGCGG AGCCGATTTC GGCCGCGATC
AACGGCAATG ACATCGTCGC CGCCTCGGTC CTGTCGGGCA ACCGCAATTT CGAGGGCCGC
GTGTCGCCCG ACGTGCGCGC GAACTTCCTC GCCTCGCCGC CGCTCGTCGT CGCCTATGCG
CTGAAGGGCA CGGTGACCGA GGATTTCACC ACCACGCCGA TCGGACAGGA CCGGGACGGC
AAGGACGTCT TCCTCGCCGA CATCTGGCCG ACCAATCAGG AAGTCGCCGA CGCGATCGCC
GGCGCGGTCG ACCGCGACAT GTTCCTGGCC CGCTACGCCC ATGTCTATCA GGGCGACGAG
CATTGGCAGA AGATCGAGGT CGAGGGCAGC GACACCTATC AGTGGCGCGC GGGCAGCACC
TATGTCGCCA ACCCGCCCTA TTTCGAGGGG ATGACGATGA CCCCGGCGCC GGTGTCGGAC
ATCGTGGATG CAAAGCCGCT CGCGATCCTC GGCGACAGCA TCACCACCGA CCACATCAGC
CCCGCGGGCA GCATCAAGGC GGACAGCCCG GCCGGAAAAT GGCTTATGGA ACATCAGGTT
AGCAAGGCCG ACTTCAACAG CTACGGCGCC CGCCGCGGCC ATCACGAGGT CATGATGCGC
GGCACCTTCG CCAATATCCG CATCAAAAAC GAAATGGTCC CCGGCATCGA GGGCGGCATG
TCGCGCTATG GCTCGGAAGT CATGCCGATC TATGACGTCG CGATGCGCCA CAAGGCCGAC
GGCACCCCGC TCGTCGTCAT CGCAGGCAAG GAATATGGCA CCGGCTCGTC GCGCGACTGG
GCGGCCAAGG GCACCAACCT GCTCGGCGTC CGCGCGGTGA TCGTCGAGAG TTTCGAGCGC
ATCCACCGCT CGAACCTCGT CGGCATGGGC GTGCTGCCGC TCCAGTTCAC CGACGGCCAG
ACGCGCGAGA CGCTGGGCCT CACCGGCGAC GACCAGTTCA CGATCACCGG CGTTGCGGAC
CTGAAGCCGC GCCAGACGGT GACCGTCAAC GTCACCCGTC CCGACGGCTC GACCTTCGCC
TTCGACGCGC TGTGCCGCAT CGATACCGCG AACGAAGTCG AATATTATAT GAATGGCGGC
ATCCTGCATT ATGTGCTGCG CAAGCTCGCG GCCTGA
|
|---|
| Protein sequence | MTTTGNDTLG TRSTLDVGGK SYAYYSLDKA AAKLGDVSRL PFSMKVLLEN LLRFEDGGFT
VSTDDVQALV DWQKDPHSNR EIQYRPARVL LQDFTGVPCV VDLAAMRDAI AKLGGDTSKI
NPLVPVHLVI DHSVMVDEFG HPKAFEQNVE IEYYRNGERY DFLKWGSKSL DNFKAVPPGT
GICHQVNLEH IAQAVWSSED ASGALVAYPD TCVGTDSHTT MINGLGVLGW GVGGIEAEAA
MLGQPVSMLI PEVVGFKLTG KLKEGVTATD LVLTATQMLR AKGVVGRFVE YYGPGLASLS
LADRATLANM APEYGATCGF FGIDDKTLDY MRLTGRSDEN IALVEAYARA QGLWLAADMP
DPVFTDTLEL DMGSVVPSLA GPKRPQDKVV LTEVDDVFNA DLRNVYGKDA PERVPVAGRE
HDIGDGDVVI AAITSCTNTS NPGVMVAAGL VAKKANERGL KPKPWVKTSL APGSQVVTDY
LVKAGLQDHL DAVGYNLVGY GCTTCIGNSG PLAEPISAAI NGNDIVAASV LSGNRNFEGR
VSPDVRANFL ASPPLVVAYA LKGTVTEDFT TTPIGQDRDG KDVFLADIWP TNQEVADAIA
GAVDRDMFLA RYAHVYQGDE HWQKIEVEGS DTYQWRAGST YVANPPYFEG MTMTPAPVSD
IVDAKPLAIL GDSITTDHIS PAGSIKADSP AGKWLMEHQV SKADFNSYGA RRGHHEVMMR
GTFANIRIKN EMVPGIEGGM SRYGSEVMPI YDVAMRHKAD GTPLVVIAGK EYGTGSSRDW
AAKGTNLLGV RAVIVESFER IHRSNLVGMG VLPLQFTDGQ TRETLGLTGD DQFTITGVAD
LKPRQTVTVN VTRPDGSTFA FDALCRIDTA NEVEYYMNGG ILHYVLRKLA A
|
|---|
| |