Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2083 |
Symbol | |
ID | 4080057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 2188781 |
End bp | 2190370 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638010458 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_617125 |
Protein GI | 103487564 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.438087 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.890804 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTCCC GCTCCCTCCC CCGCCGTCCT GCTGCCGCGG CGCTCCCCGC TGACGATATG ATCCCGCTCC ACGAACGCGT GCGCTACCGC GGCCTGCTCA CCGTCGCCGT CATGGGCGCG TCGATCATGC AGATCCTCGA CACGACGATC GCCAATGTCG CCATCCCGCA CATGCAATCG GCCTTGGGCG CGACGAGCGA AACGGTGACG TGGGTGCTCA CCAGCTATAT CCTCGCAAGC GCGATCGCGA TGCCGATCAC CGGCTGGCTC GCCGACCGCA TCGGGCGGCG CGAGCTGTTC CTTGCCGCGA TCGCGGGGTT CATCGTCGCG TCGATGGCGT GCGGCGCGGC GCAATCGCTC GAACAGATGG TCGCCTTCCG CTTTTTGCAG GGTATTTTCG CGGCCTTCAT CGGCCCGCTG TCGCAGTCGG TGATGCTCGA CATCAACCCG CCCGAGCGCC ATGCGCGCGC GATGTCGATC TGGGGCATGG GGATCATGAT CGGACCCATT CTCGGCCCCG TGCTCGGCGG CTGGCTGACC GAAAGCGCGA ACTGGCGCTG GGTCTTTTAC GTCAACCTGC CCGTCGGGCT GGTCACGCTC GCGCTGATGT GGGCGCTGCT GCCCGCGATG CGCCGGACAA GCCGCAAGTT CGATCTCTTC GGCTTTTCGA TGCTCGCGCT GGGGCTCGCC GCGCTGCAAC TGATGCTCGA CCGCGGCGCG CATCTCGACT GGTTCGACAG CATCGAAATC TGGATCGAAC TCGGCGTCGC GACGGCCTGC CTCTGGATGT TCTTCGTCCA TCTCTTCACC GCGCGCGCGC CGCTGTTCAG CCGCGCGATG CTCGCCGACC GCAACCTCGT CACCGCGATG GGCTTCATGA TCGTCATCGG CATCGTGATG TTCGCGTCGA TGGCGCTGCT GCCGCCGATG CTGCAAAATC TCTTCGGCTG GCCGGTGATC GACACGGGGC TGGTGCTCGC GGTGCGCGGC GTCGGCATCC TCGCGAGCAT GTGGGTCGCG GGGCAGTTGC TGGGCAAGGT CGACGCGCGC TGGCTCGTCG GCACCGGCCT TGCCATCGCC GCCTATTCGC TGTGGCAGAT GAGCCACTGG TCGCTCGCCA TGGGGATGCA GCCGGTGATC GTCAGCGGGC TGGTGCAGGG GCTGGGCATG GGGCTGATCT TCATTCCGCT CAACACCATG GCCTTTGCAA CGATCGCGCC GCAGCACCGC ACCGACGGGT CGAGCCTGCT GAACCTGCTC CGCAGCCTCG GCGCCTCGGT CGGCATTTCG GTGGTGACCA CCCTGCTCGG CATCAATATC CAGACCAGCC ATCAGGATCT CGCCGCGCAT GTCACCAACA GCTCGGTCGC GCTCATCGAC CCCTCGACCG CCGACCGCTT CGGCGTCGTC GGCGACACCG CGCTGGCGAT GGTCAACGCC GAGATCAACC GGCAGGCGGC GATGGTCGCC TATATCGACG ATTTCTGGCT GATGATGTGG GTGACTTTGC TTTCGGTCCC GCTCGTCCTC CTGCTCCGCC CGCCCAGGGC CGGCGCGCCC AAGGCCTCGG CGGCCGACAT GGGGCATTGA
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Protein sequence | MASRSLPRRP AAAALPADDM IPLHERVRYR GLLTVAVMGA SIMQILDTTI ANVAIPHMQS ALGATSETVT WVLTSYILAS AIAMPITGWL ADRIGRRELF LAAIAGFIVA SMACGAAQSL EQMVAFRFLQ GIFAAFIGPL SQSVMLDINP PERHARAMSI WGMGIMIGPI LGPVLGGWLT ESANWRWVFY VNLPVGLVTL ALMWALLPAM RRTSRKFDLF GFSMLALGLA ALQLMLDRGA HLDWFDSIEI WIELGVATAC LWMFFVHLFT ARAPLFSRAM LADRNLVTAM GFMIVIGIVM FASMALLPPM LQNLFGWPVI DTGLVLAVRG VGILASMWVA GQLLGKVDAR WLVGTGLAIA AYSLWQMSHW SLAMGMQPVI VSGLVQGLGM GLIFIPLNTM AFATIAPQHR TDGSSLLNLL RSLGASVGIS VVTTLLGINI QTSHQDLAAH VTNSSVALID PSTADRFGVV GDTALAMVNA EINRQAAMVA YIDDFWLMMW VTLLSVPLVL LLRPPRAGAP KASAADMGH
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