| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2053 |
|---|
| Symbol | |
|---|
| ID | 4080120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2162452 |
|---|
| End bp | 2163264 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638010427 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_617095 |
|---|
| Protein GI | 103487534 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.625975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.133256 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGTC GCCGCTCCCA AATCGAAAGC CTGTCGAACC CGCTGGTCAA GCGGATGCGC
CTGCTGCGCG AGAAGCGCCA TCGCCGCGCC GAAGGGCTGT TTCTGGCCGA AGGGCTGCGC
ATCGCGACCG AGGCGCGCGA GGCGGGCGTC TTTCCCGCGT GGCTGTTCCT GGGCCCCGAC
GGCGCGGCGC ATCCGCTGGC GCAGGCGCTG GTCGCGGACA CGATGGCCGC GGGCGGCGAG
GTGATCGACA CCACAGCCGC GATCCTCTCC AAATTGTCGG GCAAGGACAA TCCGCAGACG
ATCGTCGGCA TCTATGCCGA ACCCGCCACG ACACTCGCTG CCATCGACCG CAACGCCGCG
CCGATCTGGC TCGTCGCCGA ACGCCTCCGC GATCCCGGCA ATCTCGGCAC GATGCTGCGC
ACCGGCGACG CGGTCGGCGC GGGCGGGCTG ATTCTCCTGG GCGACAGCAC CGACCCCTAT
GGCGTCGAGG CGGTGCGCGC GAGCATGGGG GCGATCTTTA CGCAAAGGCT GGTGCAGGCG
CGCTGGGACG CGTTCCTGCC CTGGCTGCGC AGCGGACAGG GCGAGCTGGT CGCGACCTGG
CTCGGCGACG ACAGCGTCGA TTATCAGGCG GTGCGCTATG CCGCGCCAAC CTTTATCCTC
GTCGGCAATG AATCGCAAGG GCTGCCCGCC GATTATGCCG CGGCGGCCGA CGTGCGCGTC
AAGATGCCGA TGCTGGGCAA GGCCGACAGC CTGAACGCCG CCGTCGCGGC GGCGGTGATG
GCCTATGAGG TGCTGAACCA GCGGCGGCGC TGA
|
|---|
| Protein sequence | MTGRRSQIES LSNPLVKRMR LLREKRHRRA EGLFLAEGLR IATEAREAGV FPAWLFLGPD
GAAHPLAQAL VADTMAAGGE VIDTTAAILS KLSGKDNPQT IVGIYAEPAT TLAAIDRNAA
PIWLVAERLR DPGNLGTMLR TGDAVGAGGL ILLGDSTDPY GVEAVRASMG AIFTQRLVQA
RWDAFLPWLR SGQGELVATW LGDDSVDYQA VRYAAPTFIL VGNESQGLPA DYAAAADVRV
KMPMLGKADS LNAAVAAAVM AYEVLNQRRR
|
|---|
| |