| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2014 |
|---|
| Symbol | |
|---|
| ID | 4079951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2124201 |
|---|
| End bp | 2125778 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638010390 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_617058 |
|---|
| Protein GI | 103487497 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00478097 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAGCAGCC TTGTCAAAAG CGTCGGGACG ATCGGCGGGC TGACGCTGGT CAGCCGCATC
TTCGGCTTTG CGCGCGACAT GTTGCTCAGC CGCATATTGG GGGCGGGTGG CGTTGCCGAC
GCCTGGCAGC TGGCCTTTCA GCTCCCCAAT ATCTTTCGCC GCCTGTTTGC CGAGGGGGCC
TTTGCCGCCG CCTTCGTCCC GCTGTTCAAC CAGCGGATGA CGAAGGATGG CGACGCAAGC
GAGGCGCGCG CCTTTGCCGA GGCGGTGCTG GCGGTGCTGA TCCCGATCCT GATCGTCTTT
TCGGCGCTGA TGCTGATCGT CATGCCGTGG GTGATGGGGC TGTTTGCCAG CGACGCGCTC
GAAGCCGACG GCGCGCGGTT CGACCTGGCG GTGGCGATGG CGCGCATCGC CTTTCCCTAT
CTGGCCCTTA TGAGCGTCGC GACGCTATTC GCGGCGATCC TCAACAGTCT GTCGCGCTTC
GCCGCGGCCG CCGCCGCGCC GATCCTCCTC AACCTCTGCC TGATTGCGGC GCTGCTGCTC
GGCATGTTCA CCGGCGACGG CAGCGAGGAG GCCAGGGCGG CGACGGGGCT GTATCTGGCG
ATCGCCGTGT CGCTTTCGGG ATTGTTCCAG CTTGGCTGGC TTTATTATTG GGTGCGTAGA
TCCGGTTTCC GTCCGGGGCT GCGCCGCCCC CGGCTGACGG CGGGCGTTCG CGAGATGGGT
GTCCTTATCC TGCCCGCGGT GTTCGGCGCC GGCGTCTACC AGATCAGCCG CTTTGTCGAC
CTGTTCTTCA TCGCGATGCT GCCCGACAAG AGCATCACCT ATCTGGCGAT GGCCGACCGG
CTCAATCAGT TGCCGCTCGG CATCATCGGC ATTGCGCTGG GCACCGCGAT CCTGCCCGCG
CTGTCGCGCT TTGTCGCGCG GGAGGATCGC GACGGCGCCT TCCGCCTGCA AAGCAATGCG
GTCGAACTTT CGATGCTACT CACTGTTCCT GCGGCAGTCG CGCTGTTCGT CGCCGGACCC
GCGATCACGA GCGCCTTTTA TGTCGGCGGC GCGTATAGCG CGGCCGACGG GCTGGCGACC
GGCGCGGTCG TCGGCGGGCT GGTCATCGGC CTGCCCGCCT ATGTGCTGGT GAAGGTACTG
GTCCCCAATT TCTTTGCGCG CAAGGACACG CGCACACCGG TGTGGACCGC AGCGGCGTCG
CTGGTCATCA ACATCGCGCT GAATCTGCTT CTGATCCCGC CGCTCGGCAT CGTCGGGCTG
GCGCTTGCGG GTTCGCTTGC CGCCTGGTGC AATGTCACGA TGCTCTATGC GATTCTGCAT
CGGAAAGGGC TGTTCCACCT GACCGGACAA GTGCTGAGCC GGATTGCGCG CATCGCGCTT
GCCGCGGCGG CGATGGCGGC GGCGCTCCAT TTCGTCATTC CGCTGGCGGG CGACGCTTTC
ACGGGCGGCG TGTTCGAGCG GATCGCCGCG CTCGGCGCGA TCGTTGCGGC CGGGGCGGCG
ACATTCTTTG GTTGCGCCTT GCTTTTCGGC GTGGTCAATC GCGACACCGT CGGCCAGTTG
CGTCGACGGC AATTGTAA
|
|---|
| Protein sequence | MSSLVKSVGT IGGLTLVSRI FGFARDMLLS RILGAGGVAD AWQLAFQLPN IFRRLFAEGA
FAAAFVPLFN QRMTKDGDAS EARAFAEAVL AVLIPILIVF SALMLIVMPW VMGLFASDAL
EADGARFDLA VAMARIAFPY LALMSVATLF AAILNSLSRF AAAAAAPILL NLCLIAALLL
GMFTGDGSEE ARAATGLYLA IAVSLSGLFQ LGWLYYWVRR SGFRPGLRRP RLTAGVREMG
VLILPAVFGA GVYQISRFVD LFFIAMLPDK SITYLAMADR LNQLPLGIIG IALGTAILPA
LSRFVAREDR DGAFRLQSNA VELSMLLTVP AAVALFVAGP AITSAFYVGG AYSAADGLAT
GAVVGGLVIG LPAYVLVKVL VPNFFARKDT RTPVWTAAAS LVINIALNLL LIPPLGIVGL
ALAGSLAAWC NVTMLYAILH RKGLFHLTGQ VLSRIARIAL AAAAMAAALH FVIPLAGDAF
TGGVFERIAA LGAIVAAGAA TFFGCALLFG VVNRDTVGQL RRRQL
|
|---|
| |