| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1955 |
|---|
| Symbol | |
|---|
| ID | 4080504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2062393 |
|---|
| End bp | 2063058 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638010332 |
|---|
| Product | phosphatidate cytidylyltransferase |
|---|
| Protein accession | YP_617000 |
|---|
| Protein GI | 103487439 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0575] CDP-diglyceride synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.388381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCAA AATCGGACCT TTGGGTGCGG GTGGGATCGG CGATCATATT GTTTGCGATT
GCGGGGACCG CGCTGTGGTT CGGCGGCATC GCGTTCGGGC TGCTGCTGCT TGTCGGCGGC
GCGCTCGTTC TCGTCGAATG GCTCGCGCTG GTGCGCGCGA TGGCGATTGG TGGCGGGTCG
AAGGCAGCGC TGACGATCAT TGGCCCGGTG CTCATCCTCG GCGCGGCCGC GGGCCTGTGG
TTCGTTCGCG ACCAGCTCGG CATGACGGCC GCGCTGTGGG TCTTTGGCAT GGTCTGGGCG
ACCGACATCG GCGCCTATTT TGCCGGGCGT TCCTTTGGCG GCGCGCGGCT GGCGCCGACG
ATCAGCCCGT CGAAGACCTG GTCGGGCCTG TTCGGCGGCA TGGTCGCGGC GCTGATCGCC
AGCGCGACGA TCGGCGACCG CGCGGGCATC GTCGGCGTGC CGCTGTGGAT CGGCCTGTTC
ATGGGCCTGC TCGCGCAAAT GGGCGATCTC GCGCAAAGCT GGATGAAGCG CCGCGCTGGG
GTGAAGGATT CGGGCAAGCT GATCCCCGGC CACGGCGGCC TGTTCGATCG CGTCGACGGT
TTGCTGCCGG TCGCGCTGCT GCTCGGCGCG CTGGCGTTCG CGGGCCAGAT CGGGGCGCGC
GGCTGA
|
|---|
| Protein sequence | MAAKSDLWVR VGSAIILFAI AGTALWFGGI AFGLLLLVGG ALVLVEWLAL VRAMAIGGGS
KAALTIIGPV LILGAAAGLW FVRDQLGMTA ALWVFGMVWA TDIGAYFAGR SFGGARLAPT
ISPSKTWSGL FGGMVAALIA SATIGDRAGI VGVPLWIGLF MGLLAQMGDL AQSWMKRRAG
VKDSGKLIPG HGGLFDRVDG LLPVALLLGA LAFAGQIGAR G
|
|---|
| |