| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1898 |
|---|
| Symbol | |
|---|
| ID | 4082604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1997835 |
|---|
| End bp | 1998662 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638010274 |
|---|
| Product | peptidase U61, LD-carboxypeptidase A |
|---|
| Protein accession | YP_616943 |
|---|
| Protein GI | 103487382 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1619] Uncharacterized proteins, homologs of microcin C7 resistance protein MccF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.186382 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTG GCATCGTTGC CCCCTCGACC CCGATCCTGC CCGACGATGC CGAGGCGGTG
CGCGCGCTGG CCAGTCTCGG CTACCCCGGC GTCGAACTGA TCTTCGACCC GCAATGTTTC
GCAATGCATG GCCATTTCGC GGGTGAGGAC GGGCACCGTT TTGCCGCGCT CGTCGAAATG
GCGAACCGTC CCGACATCGA TGCGCTGTGG TTCGCGCGCG GCGGCTATGG TGCGTGCCGG
ATCGCCGAGG AGGCGGTCGC GGCGATGGCC GATGTAGCCC GCGCCAAAGC CTTCCTCGGC
TATTCGGATC AGGGCAATCT GCTGGCGGCG CTCTATCGCG ACGGCTTTGA CCATGTCGCG
CACGGACCGA TGGTCGCCGA TATCCGGCGC GAAGGCGGCG AGGCGGCGGT GACGCGCGCG
CTCGACTGGC TGGTCGCGCG CGATCCCGCG GCGTGCGAGC CGGGGCTGGA GCATGGCGCG
CGCCATGCGG CGTTCAACCT GATGACGCTG TCGATGCTGC TCGGCACCCC GCTCGAACCC
GATCTGGCTG GGCATGTGCT GCTGATCGAG GAGGTCAGCG AATATCTATA CGCCTTTGAC
CGGGCGCTGT TTCATGTGAC GAGCTATCTG GCGCCGCGCG GGCTTGCCGG ACTCCGGCTG
GGGCGGGTTA GCGACATTCC GGAAAACGAC CGGCCTTTTG GACTGGACGC GGAAGAAATT
GCGCAGGGCT GGTGCTCGCG CACCGGCATC CCCTGGCTCG GTCGCGCCGA CATCGGCCAT
GATGCGGCGA ACAAGGTCGT GCCCTTCGGC TTGCATCGGG CGGGGTGA
|
|---|
| Protein sequence | MRIGIVAPST PILPDDAEAV RALASLGYPG VELIFDPQCF AMHGHFAGED GHRFAALVEM
ANRPDIDALW FARGGYGACR IAEEAVAAMA DVARAKAFLG YSDQGNLLAA LYRDGFDHVA
HGPMVADIRR EGGEAAVTRA LDWLVARDPA ACEPGLEHGA RHAAFNLMTL SMLLGTPLEP
DLAGHVLLIE EVSEYLYAFD RALFHVTSYL APRGLAGLRL GRVSDIPEND RPFGLDAEEI
AQGWCSRTGI PWLGRADIGH DAANKVVPFG LHRAG
|
|---|
| |