| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1885 |
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| Symbol | |
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| ID | 4082630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1983678 |
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| End bp | 1985057 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638010261 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_616930 |
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| Protein GI | 103487369 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.061566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCC CGCTCTGGAC CGCGCGCACC ATCGCCCAAG CGACTGGCGG AATCGCCAGC
GCCGATTTCA CCGTGAGCGG CGTCGCCTTC GATTCGCGCG AAGTCACCAG GGGCGATCTC
TTCATCGCGA TGAAGGGCGA GAATGCCGAC GGGCACAGCT TCATCGACAA GGCGATTGCC
GCGGGCGCCG CGGGCATTGT CTGCGAAACG GCGATCGACC ATCCGCATGT GCGCGTTGCC
GACAGCGCCG CGGCGCTGAA CGCTCTGGGC ACCGCGTCGC GTGCGCGCAG CCACGGCCGC
ATCATCGGCG TCACGGGGTC GGCGGGCAAG ACGGGGACAA AGGAAGCGCT GTTCGCGGCG
CTCGACCGCT TCCGGCCCGG CAAGGCGCAT CGCTCGGTCA AAAGCTACAA CAATCATGTC
GGCGTTCCCT TGAGCCTCGC GCGGATGCCG TCGACCGCCG ATTTCGGCAT ATTCGAGATG
GGGATGAACC ATGCGGGCGA ACTCGCCGCG CTGACCCGCA TCGTGCGCCC GCATGTCGCC
ATCGTCACCA CCATCGCGCC CGCGCACATG GAGTTTTTTG GCAGCGAGGA AGCGATTGCC
GACGCAAAGG GCGAGATTTT CGAGGGGCTG GAGCCCGGCG GAACCGCGAT CATCCCCTTC
GACAGCCCGC ATTATGCGCG CCTTCGCGCC AAGGCCGAGC AACATGCGGC GCATATCGTC
AGCTTCGGGC TGGCCGAGGG CGCCGACGTG CGCGCGGTCG ACTGGCTTCC CGACGGGAAG
GGCGGCTCGC TCGTCACCGC CCAGGTGCAG GACGCGCTCC TTTGCTTCAC CATCGCGCAG
GCGGGGGCAC ATTGGGTCGC CAATTCGCTC GCGGTGCTGG CGGCGGTGAA GGCGGTCGGC
GGCGACCTTC CCGCGGCGGG GCTTGCCTTT GCCGAAATGC CGGGCCTCAC CGGACGCGGC
GCGCGCCATC GGATCGCGGT GCCCGGCGGG CATATCCTCG TCATCGACGA AAGCTATAAT
GCCAATCCCG CCTCGATGGC GGCGACGATC GGTCAGCTCG CAGGCGAATC CGCCGACCGT
AAGGTGGCGA TTCTGGGCGC GATGAAGGAG CTTGGACCGG GCGGCGAGGC CTATCATGCG
GGCCTCGCGG CTCCGCTCGT CGCAGCAGGC GTGCAATTCG CCCTGCTAGT CGGCGAAGAG
ATGGCGCCGC TCGCCAAAGC GCTTGAGGGA CGCATCGATT TCGCGCATGT GCCCGCGCAC
CCCGACGCCA CGGCGCGACT GGGCGGCCTC ATCCGTCCCG GCGATGCAGT GCTCGTCAAG
GGATCGAACA GCGTCGGCCT GTCGCATGTC GTGACGGCGC TGATCAACGG GGATTATTGA
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| Protein sequence | MTTPLWTART IAQATGGIAS ADFTVSGVAF DSREVTRGDL FIAMKGENAD GHSFIDKAIA
AGAAGIVCET AIDHPHVRVA DSAAALNALG TASRARSHGR IIGVTGSAGK TGTKEALFAA
LDRFRPGKAH RSVKSYNNHV GVPLSLARMP STADFGIFEM GMNHAGELAA LTRIVRPHVA
IVTTIAPAHM EFFGSEEAIA DAKGEIFEGL EPGGTAIIPF DSPHYARLRA KAEQHAAHIV
SFGLAEGADV RAVDWLPDGK GGSLVTAQVQ DALLCFTIAQ AGAHWVANSL AVLAAVKAVG
GDLPAAGLAF AEMPGLTGRG ARHRIAVPGG HILVIDESYN ANPASMAATI GQLAGESADR
KVAILGAMKE LGPGGEAYHA GLAAPLVAAG VQFALLVGEE MAPLAKALEG RIDFAHVPAH
PDATARLGGL IRPGDAVLVK GSNSVGLSHV VTALINGDY
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