| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1855 |
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| Symbol | |
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| ID | 4082033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1950195 |
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| End bp | 1950974 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638010230 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_616900 |
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| Protein GI | 103487339 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.78955 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACA GGAATCTTGC GGGGCGCATC GCGCTCGTTA CCGGCGCCTC GCGCGGCATC
GGGCGCGGCA TTGCGATCGG ACTTGCGGAG GCGGGCGCCG ACGTCGCGGT GAATTACACA
CGCGACGAAG CAGCCGCCGC CGAAACGGTC GCCGCCATTC AGGCGCTCGG CCGCAAGGCG
AAGGCCTATC GGGCGTCGGT CACCGACGAA GCCGGCTGCG CCGCGATGGT CGCCGCGGTC
GCTGCCGACT TCGGCGCCAT GTCGATCCTC GTCAACAATG CGGGCGTCGC CAGCCGCGGG
CTGTCGGTCG CCGACACCAG CCCCGAAGAG GTCGACAAGC TCTTCGCCGT CCACGCCGCC
GGTCCGCACC GCCTCAGCCG CCTCGCGCTG CCACAACTGC GGAGCCATGC GCGCAGCGAC
ATCATCATCA TCTCCAGCAT CGCCACCTAT GTGAACGCGC CGAACGGCGC CCCCTACACG
ATGGCGAAGG CGGCGGGCGA AGCGCTTGCG CTGACGCTCG CCAAGGAGGA ACTGAAGAAC
GGTGTCCGCG TCAACATCGT CGCCCCCGCG CTCACCGTCA GCGACATGGG CGAAAAACTC
TCGCGCGCGA TCACCGGCGA GGACGACATC CACCATCTCG ACGCCAAAAT GCCCTTCGGC
CGCGTCGCCC TCCCCGCCGA CGTCGCCGCC GCGGTCGTGT GGTTCGTCAG TGACGCGAAC
AGCTATTGTT CGGGGCAAAA GCTCAACATC GACGGCGCGG GACAGGCGAC GTTTCGGTGA
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| Protein sequence | MSDRNLAGRI ALVTGASRGI GRGIAIGLAE AGADVAVNYT RDEAAAAETV AAIQALGRKA
KAYRASVTDE AGCAAMVAAV AADFGAMSIL VNNAGVASRG LSVADTSPEE VDKLFAVHAA
GPHRLSRLAL PQLRSHARSD IIIISSIATY VNAPNGAPYT MAKAAGEALA LTLAKEELKN
GVRVNIVAPA LTVSDMGEKL SRAITGEDDI HHLDAKMPFG RVALPADVAA AVVWFVSDAN
SYCSGQKLNI DGAGQATFR
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