| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1844 |
|---|
| Symbol | |
|---|
| ID | 4082022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1938125 |
|---|
| End bp | 1939789 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638010219 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_616889 |
|---|
| Protein GI | 103487328 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.371248 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCC TTATCCTGAC CGCGCTGGCC CTCACCCTCG CCGCCCCCGC GCACGCCGAT
ACGCTGGTCG ACAATGTCAA CGGCATCACG CTCGACAGGG ACGGCAAGCT CGTCCGCTTT
ACCGGCCTTG TGATCGACGG CGAAGGCAAG GTGAAGCAGT TGCTCGACCG CAAGGACAAG
CGCCCCGAGC GCCCCGATTT CAAGGAGGAT GGAAAGGGCC GGACGCTGAT TCCCGGCCTG
ATCGACGCGC ACGGGCATGT CATGGGGCTT GGTTTCCAGC TGATGCTGCT CGACCTCAGC
GACACGAACA GCCTGGCCGA GGCGCAGGCG GCGATCCGCC GATATGCCGC CGAAAATCCC
GAAATGCCGT GGATCATCGG GCGCGGCTGG AATCAGGAGA AATGGGGACT CGGCCGCTTC
CCGACCGCCG CCGACCTCGA CGCCGCGGTG TCCAACCGCC CCGTCTGGCT CGAGCGCGTC
GACGGCCATG CAGGCTGGGC GAACAGCGCG GCGATGGCGG CGGCAAAGGT CACCGCGGCG
AGCAAGTCGC CCGAAGGCGG ACGGATCGAG ATGGCCGATG GCAAACCGTC GGGCGTCTTC
GTCGATGCCG CGATGAGCCT GATCGACGTT GCCAAACCCA GGCCGCTCGC GCGCGATCTC
GACCGAGCGC TCTATCTGGC GCAGCAAAAA TTGCTCGAAC AGGGGATCAC CGCGATCGCC
GACATGGGCA CGACGATCGC CGAATGGCAG GCGTATCGCC GCGCGGGCGA CAAGAAACAG
CTTGCGGTGC GCATCCTCTC CTATGGCGGC GACATCGACA ATATGGCGAT CATCGCGGGC
AGCGAACCGA CGCCCTGGCT TTACGACGAC CGCCTGCGCA TGGTGGGCGT GAAGCTCTAT
CTCGACGGCG CGCTCGGTTC GCGCGGCGCG TGGCTGAAGG CGCCCTATAC CGATGCGCCG
GGGCAGAAAG GCCTGCCCCT GCTCACCCCC GCGCAGCTCC GCAACAAGAT GGTGCGCGCG
TCGATGGACA GGTTCCAGGT CGCGATCCAC GCTATCGGCG ACGCCGCCAA TGCCGAGGCG
CTGGCCGCCA TTGCCGACCT CGACGCCGAC CTTCCCGGCG AGCGGCGCTG GCGCATCGAA
CATGCGCAGG TGATTGACCC CGCCGACATG GCGCGCTTCG CCAGCCTGAA GGTCGTCGCC
TCGATGCAGC CGGTGCATCA GACGAGCGAC CGGCTGATGG CCGAAGCGCG GCTCGGCCCC
GATCGCCTCG CGGGCGCCTA TGCGTGGCGC AGCCTCGAAA CGGCGGGCGT CCGCCTTGCC
TTCGGCTCCG ACGTGCCGGT CGAAAGCGCC AATCCGTTCG CTGGGCTCGC TGCGGCGATC
TCGCGCACCG ATGCCGCGGG CCAGCCGTTC GGCGGCTGGC ACCCCGAGGA AGCGGTGAGC
CGCGAGACCG CGCTCGACGG CTTCACCCGC ACCGCGGCTT ATGCCGGCTT TGCCGAGGAC
CGCATCGGCA CGTTGATGCC AGGGATGCGC GCTGACTTCC TGATCGTCGA TACCGACCCG
ATGATGGCAA GCCCCGACGA GATCCGCCGC ATGACCCCGC TCGAAACCTG GATCGGTGGC
TATCGCTATT ACAAGAAGAA GGAGGGTGCG ACGATTGGCC GTTGA
|
|---|
| Protein sequence | MKRLILTALA LTLAAPAHAD TLVDNVNGIT LDRDGKLVRF TGLVIDGEGK VKQLLDRKDK
RPERPDFKED GKGRTLIPGL IDAHGHVMGL GFQLMLLDLS DTNSLAEAQA AIRRYAAENP
EMPWIIGRGW NQEKWGLGRF PTAADLDAAV SNRPVWLERV DGHAGWANSA AMAAAKVTAA
SKSPEGGRIE MADGKPSGVF VDAAMSLIDV AKPRPLARDL DRALYLAQQK LLEQGITAIA
DMGTTIAEWQ AYRRAGDKKQ LAVRILSYGG DIDNMAIIAG SEPTPWLYDD RLRMVGVKLY
LDGALGSRGA WLKAPYTDAP GQKGLPLLTP AQLRNKMVRA SMDRFQVAIH AIGDAANAEA
LAAIADLDAD LPGERRWRIE HAQVIDPADM ARFASLKVVA SMQPVHQTSD RLMAEARLGP
DRLAGAYAWR SLETAGVRLA FGSDVPVESA NPFAGLAAAI SRTDAAGQPF GGWHPEEAVS
RETALDGFTR TAAYAGFAED RIGTLMPGMR ADFLIVDTDP MMASPDEIRR MTPLETWIGG
YRYYKKKEGA TIGR
|
|---|
| |