Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1842 |
Symbol | |
ID | 4082020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1935505 |
End bp | 1936755 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638010217 |
Product | threonine dehydratase |
Protein accession | YP_616887 |
Protein GI | 103487326 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1171] Threonine dehydratase |
TIGRFAM ID | [TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.53937 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGATC ACCTTACCCT GACCTCCGCG GCCGATTTTC CGGCGATCAC ATTGGACGAT GTGCGCGCGG CGGCGGGGCG AATTAACGGC GCGGTGGTGC GCACGCCGAC GCTCCATTCG CAGACGCTGT CCGAGCTGGT CGGCGCCGAG GTGTGGCTGA AGTTCGAGAA TCTGCAATTC ACCGCGGCCT ACAAGGAACG CGGGGCATTG AACGCGCTGC TGCTGCTCAG CGAAGAAGCC AGGGCGCGCG GCGTGATCGC GGCGTCGGCG GGCAATCATG CGCAGGGGCT GGCCTATCAC GGCAAAAGGC TGGGCGTGCC CGTCACCATC GTGATGCCCA GCACGACGCC GCAGGTGAAG GTGTCGCAGA CCGCGGGCCA CGGCGCGACG ATCGTGCTGC ACGGCGAAAA GTTCGACGAC GCCTATGCCC ATGCGCGCGA GCTGGAAGAG GAACGCGGGC TTACCTTTGT CCACCCCTTC GACCATCCGC ACGTCGCGGC GGGGCAGGGG ACGGTGGCGC TCGAAATGCT TGAGGATGTG CCTGAACTCG ACACGCTGAT CGTGCCGATC GGCGGCGGCG GGCTGCTCGC GGGCATGGGC ACCGCGGCGC GCGGGATCAA GAACGACATG CGCCTCGTCG GCGTGCAGGC CGAGCTTTAT CCCTCGATGT ACGCCGAGCT GAACGGCGTC GACATGGCGT GCGAGGGCGA TACGCTGGCC GAGGGCATCG CGGTCAAGGA ACCGGGGAGC TATACGCGCA AGCTCGTCGC CGAGCTCAAC GACGACATCG TGCTCGTCGC CGAACGGCAT CTGGAGCGCG CGGTGAGCCT GTTGCTCCAG ATCGAAAAAA CGGTCGTCGA GGGCGCGGGC GCCGCGGGCC TCGCGGCGAT GCTCGCGCAC CCCGACGAGT TCGCCGGGCG CAAGGTCGGA CTGGTGCTCA CCGGCGGCAA TATCGACACG CGCCTCCTCG CGAACGTGCT GCTGCGCGAC CTTGCGCGAT CGGGCCGCAT CGCGCGGCTG CGCATCCGCT TGCAGGACCG CCCCGGCGCG CTGTTCAAGG TGATGAAGCT GTTCGACGAG AAACAGGTCA ACATCATCGA AATCTATCAC CAGCGCATCT TCACGACGCT CCCCGCGAAA GGGCTGATCA CCGACATCGA ATGCGAAGCG CGCGACCGCG AGCATCTCGA CAGCCTCGTC ACCGCTCTGC GCGACGCGGG CTATATGGTG ACGACGGTCG AGCTGGCTTA G
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Protein sequence | MTDHLTLTSA ADFPAITLDD VRAAAGRING AVVRTPTLHS QTLSELVGAE VWLKFENLQF TAAYKERGAL NALLLLSEEA RARGVIAASA GNHAQGLAYH GKRLGVPVTI VMPSTTPQVK VSQTAGHGAT IVLHGEKFDD AYAHARELEE ERGLTFVHPF DHPHVAAGQG TVALEMLEDV PELDTLIVPI GGGGLLAGMG TAARGIKNDM RLVGVQAELY PSMYAELNGV DMACEGDTLA EGIAVKEPGS YTRKLVAELN DDIVLVAERH LERAVSLLLQ IEKTVVEGAG AAGLAAMLAH PDEFAGRKVG LVLTGGNIDT RLLANVLLRD LARSGRIARL RIRLQDRPGA LFKVMKLFDE KQVNIIEIYH QRIFTTLPAK GLITDIECEA RDREHLDSLV TALRDAGYMV TTVELA
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