| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1832 |
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| Symbol | |
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| ID | 4082184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1926744 |
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| End bp | 1928576 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638010207 |
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| Product | DEAD/DEAH box helicase-like protein |
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| Protein accession | YP_616877 |
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| Protein GI | 103487316 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00214348 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.596692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTTCG AACATCTTTC GCCCGTTCTT GCGGACGCCC TCGCCGCGCG CGGCTATGAA
GCGCTCACCC CCGTCCAGTT GCAGGTCACT GAGGCCGAAG CCAAGGGCCG CGACCTGCTC
GTCTCGGCGC AGACCGGCTC GGGCAAGACC GTCGCCTTCG GGCTGGCGAT GGCCGACGAG
CTGATCGAGG ACGGCCGCCT GCCCTTCGCC ACCTCGCCGC TTGCGCTGAT CGTCGCGCCG
ACGCGCGAAC TCGCATTGCA GGTCAGCCGC GAGCTCGGCT GGCTCTATGC CAGGGCCGGG
GCGCGCATCG CGACCTGCGT CGGCGGCATG GACGCCAGCA AGGAACGCCG CGCGCTGAAC
CAGGGCGTGC AGATCGTCGT CGGTACGCCG GGCCGACTGC GCGACCATCT CGAGCGCGGG
GCGCTCGACC TTGCCGCGCT GCGCGTCGCG GTGCTCGACG AGGCCGACGA AATGCTCGAC
ATGGGCTTTC GCGACGATCT GGAGGAAATC CTCGACGCGA CCCCCGAAAC GCGCCGCACG
CTCCTGTTTT CGGCAACGAT CCCCAAACCG ATCGTCCAGC TGGCCAAGCG TTACCAGCGC
GATGCGCTGC GCATCTCGAC CGTCGGCGAA GACCGCGGTC ATGGCGACAT CGCCTATCAG
GCGGTGACGG TCGCCCCCGC CGACATCGAG GGCGCGGTGG TCAACCTGCT CCGCCTGCAC
GATGCCGAAA CGGCGATGCT GTTCTGCGCG ACGCGCGACA ATGTTCGCCG TCTGCACGCC
AGCCTTGTCG AGCGCGGGTT CGCCGCCGTG GCGCTCTCGG GCGAGCATAG CCAGAATGAA
CGAAATCAGG CGTTGCAGGC GCTGCGTGAT CGCCGCGCCA AGGTCTGCGT TGCGACCGAC
GTCGCCGCGC GCGGCATCGA TCTGCCGACG CTCAGCCTGG TCATCCACGT CGAAATCCCG
CGCGATGCCG AAGCGCTCCA GCACCGGTCG GGCCGCACTG GCCGCGCGGG CAAAAAGGGC
ACCGCGGTGA TCATCGTCCC CTATCCGCGC CGCCGCCGCG TCGACGGGAT GCTGCGCGGC
GCGCGGATCA ACGCCGAATG GATGGACGCG CCGACCGCAG CCGACGTCCG GCAAAAGGAT
CAGGAACGGC TGATCGAAAA GCTGCTGGCC CCCGTCGAGC ACGAGCCCGA AGATCTGGCG
CTGGCGCAGC GGCTGATGGC CGAGCGCACG CCCGAAGACA TCGCCGCATC GCTCGTCCGC
GCGCACCGCG CGCTGATGCC GCCGCCCGAG GATCTGCTCG ACAACGGGCC GCGCGGCCGT
GATGCCACGG GCCGTCCCGA GCGCGGCGAG CGTTTTGAGC GGCCGGAACG CGGCGGCGAC
CGCCGCGAGG GGTTCGAGGA CGCCGTCTGG TTCCGCCTGA ACATCGGCCG CCACCAGAAT
GCCGATCCGC GCTGGATCCT GCCTTTGCTG TGTCGCCGCG GCCATGTAAG CAAGAATGAG
ATCGGCGCGA TCCGCATCGG GCCGAAGGAA ACGATGTTCA ACATCCCGCG CGCGATCGCC
GACCGTTTTG CCGAAGCCGT GGTGCGCACC GCGAACCAGG ATGGCGAGGA CGACAGCGGG
GTCGCGATCA CCCCCGCGCC CGATGGGCCG ACCTGGCCGC CGCGCCGCGA CAAGGGCTCG
GGCGACCGGG CGCCGCGCAG CACGCTCGGT CGGGCGCCCG GCGGCGAGCG TTCGGGTCCG
CGCGGGCCGC GTGGTCCGGC CGGACCGGGC GGCAACGAAC GCTACAAGCC CAAGCCCTAC
GGCCAGCGCA GCCCGCGCCG TCCGGCGAAG TAA
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| Protein sequence | MPFEHLSPVL ADALAARGYE ALTPVQLQVT EAEAKGRDLL VSAQTGSGKT VAFGLAMADE
LIEDGRLPFA TSPLALIVAP TRELALQVSR ELGWLYARAG ARIATCVGGM DASKERRALN
QGVQIVVGTP GRLRDHLERG ALDLAALRVA VLDEADEMLD MGFRDDLEEI LDATPETRRT
LLFSATIPKP IVQLAKRYQR DALRISTVGE DRGHGDIAYQ AVTVAPADIE GAVVNLLRLH
DAETAMLFCA TRDNVRRLHA SLVERGFAAV ALSGEHSQNE RNQALQALRD RRAKVCVATD
VAARGIDLPT LSLVIHVEIP RDAEALQHRS GRTGRAGKKG TAVIIVPYPR RRRVDGMLRG
ARINAEWMDA PTAADVRQKD QERLIEKLLA PVEHEPEDLA LAQRLMAERT PEDIAASLVR
AHRALMPPPE DLLDNGPRGR DATGRPERGE RFERPERGGD RREGFEDAVW FRLNIGRHQN
ADPRWILPLL CRRGHVSKNE IGAIRIGPKE TMFNIPRAIA DRFAEAVVRT ANQDGEDDSG
VAITPAPDGP TWPPRRDKGS GDRAPRSTLG RAPGGERSGP RGPRGPAGPG GNERYKPKPY
GQRSPRRPAK
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