Gene Sala_1817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1817 
Symbol 
ID4082208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1914629 
End bp1917364 
Gene Length2736 bp 
Protein Length911 aa 
Translation table11 
GC content63% 
IMG OID638010192 
Productpreprotein translocase subunit SecA 
Protein accessionYP_616862 
Protein GI103487301 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) 
TIGRFAM ID[TIGR00963] preprotein translocase, SecA subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.513906 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0849834 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGCTG GCCTTGCCAA GAGCCTGTTC GGCTCGTCCA ACGACCGTTA TGTCAATTCG 
ATCCGCAAGA TCGTCGAGCG GATCAACGCC TTCGAACCCG CGATGCAGGC GCTCGATGAC
GCCGGATTGC AGGGGCAGAC GGCAACCTTC CGCGCGCGGC TGGCCGCGGG CGAAACGCTC
GACGACATTC TGCCCGAAGC CTTTGCCACG GTGCGCGAGG CGGCGGTGCG CACATTGGGG
ATGCGTCATT TCGACGTCCA GATGATCGGC GGCGTTGTCC TCCACCGCGG CGAGATCGCC
GAAATGGCGA CGGGCGAGGG CAAGACGCTG ATGGCGACCC TGCCCTGTTA TCTGAACGCG
CTGAGCGGCA AGGGCGTGCA TGTCGTCACC GTCAACGACT ATCTGGCGCG CCGCGACGCC
GAATGGATGG GCGCCGTCTA TGGCTTCCTG GGGCTGACCA CCGGCGTGAT CGTCCCGAAC
CTCAACGAGA CGCAGCGGCG CGAGGCCTAT AACAGCGACA TCACCTATGC GACGAACAAC
GAGCTGGGCT TCGACTATCT GCGCGACAAT ATGAAGTTCG ACCGCGCGCA GATGGTCCAC
CGCCCGTTCA ATTTCGGCAT CGTCGACGAG GTCGATTCGA TCCTGATCGA CGAAGCGCGC
ACGCCGCTCA TCATCTCCGG GCCGACCGAC GACAAGTCCG AACTCTATAT CCGCGTCAAC
GAGGTGGTGC TCCAGCTCAC CGAAGAGGAT TATGAGAAGG ACGAAAAGTC CAAGTCCATC
AACCTGACCG AAGAAGGCAC CGAGCATGTC GAGCGGCTGC TCGAAGCCGC GGGGCTGCTC
CAGGGCAGCA ACCTTTACGA CATCGAAAAC ACCCAGGTCG TCCATCACGT CAATCAGGCG
CTGAAAGCGA TCCAGATGTT CCGCATCGAC ACCGACTATA TCGTCAAGGA CGGCAAGGTC
GTCATCATCG ACGAGTTCAC CGGCCGCATG ATGGAGGGGC GCCGCTGGTC CGACGGTCTG
CACCAGGCGG TCGAGGCGAA GGAAGGCGTG CAGATCGAGC CCGAGAACCA GACGCTCGCG
TCGATCACCT TCCAGAATTA TTTCCGCATG TATCCGAAGC TTTCGGGCAT GACCGGCACC
GCGGCGACCG AGGCGGCCGA GTTTTTCGAC ATCTACAAGA TGAACGTCGT CACCATCCCG
ACCAATCGCC CGATCGCGCG GATCGACGAA GAGGACGAGT TTTACAAAAA TATCAACGAC
AAGTTCGGTG CGATCGCGCG CACGATCCGC GAGGCGCAGG AGCGCGGCCA GCCGGTGCTC
GTCGGCACGG TGTCGATCGA GAAGTCCGAG CTGCTCTCCT CCTTCCTCGA AAAGGAAGGC
GTCGCGCACA GCGTCCTCAA CGCACGCTTC CACGAGAGCG AAGCGCGTAT CGTCGCGCAG
GCGGGACGCA GCGGTGCGGT CACCATCGCG ACCAACATGG CGGGCCGCGG CACCGACATC
AAACTGGGCG GCAACGAGGA GTTCCGCATC GAGGATGAGC TCAAGGACAT GCCCGCCGGG
CCCGAGCGCG ACGCCGCCGA GGCGCGCATC CGCGAAGAGG TCGCCGCCGA GCGCGAGGCG
GTGAAGGCCG CCGGCGGGCT GTTCGTGCTC GCGACCGAGC GCCACGAAAG CCGCCGCATC
GACAATCAGC TGCGCGGTCG TTCGGGACGG CAGGGCGACC CCGGCCTCAG CAAATTCTAT
CTCTGCCTCG ACGACGACCT GCTGCGCATC TTTGGTCCCG ACACGCTGTT CGCCAAGATG
ATGAACAAGA ATCTGGAGGA TGGCGAGGCG ATCGGGTCGA AATGGCTGTC GAAGGCGATC
GAGACCGCGC AGAAGAAGGT CGAGGCGCGC AATTACGACA TCCGCAAGCA GGTCGTCGAA
TATGACAATG TGATGAACGA CCAGCGCAAG GTCATCTATG AACAGCGCGG CGAGATCATC
GACAGCGAGA CCGTCGACGA CGTGATGGCG GCGATGCGCG CCGAAACGGT CAATGCGATC
GTCGCCGACG CCTGCCCGCC GGGAAGCTAT CCCGAGCAAT GGAATGTCGA AGGCATGAAG
GAGCGTGTGG CGAACATTCT GAACCTGCAT CCGCCTATCG ACGAGTGGAT GCAGGAGGAT
GCCGTCGACC CCGAAATGTT CGAGGAGCGG CTGCAGCGGA TGGCCGACGC GACAGCCGCC
GAAAAGGCGG CGCTGGTCGA TGCGGAAACC TGGAAGGGCA TCGAAAAGTC GATCCTGCTC
CAGACGCTCG ATCACCATTG GAAGGAGCAT CTCGCGACGC TCGACGCGCT TCGGCAGGTG
GTGTTCCTGC GCGCCTATGC ACAGAAGCAG CCGATCAACG AATATAAGCA GGAGGCGTTC
GCGCTGTTCG AGCGGATGCT GTCGAACATC CGCGAGGATG TGACGCGCAC CGTCGCGCGC
ATCGATTTCC AGTTCCAGGA ACCCGAACCG ATGCCGCTGC CCGAGCTTCC CGATTTCCTG
ACGACGCACA TCGACCCCTT CACCGGCGAG GACAACAGCG CCGACGTCGA TGCGGGGTCG
CTGGGGGTGA TCGCCGACAC GCTGCCCCCG ATGCAGGTGC CCAAGCACGA CATCGCCAGG
GGCGAGAACC CCTATGCGGC GATGGAGATC AGTCGCAACG CGCCGTGCCC GTGCGGGTCG
GGGCGCAAAT ACAAGCATTG CCACGGGGCG ATTTGA
 
Protein sequence
MFAGLAKSLF GSSNDRYVNS IRKIVERINA FEPAMQALDD AGLQGQTATF RARLAAGETL 
DDILPEAFAT VREAAVRTLG MRHFDVQMIG GVVLHRGEIA EMATGEGKTL MATLPCYLNA
LSGKGVHVVT VNDYLARRDA EWMGAVYGFL GLTTGVIVPN LNETQRREAY NSDITYATNN
ELGFDYLRDN MKFDRAQMVH RPFNFGIVDE VDSILIDEAR TPLIISGPTD DKSELYIRVN
EVVLQLTEED YEKDEKSKSI NLTEEGTEHV ERLLEAAGLL QGSNLYDIEN TQVVHHVNQA
LKAIQMFRID TDYIVKDGKV VIIDEFTGRM MEGRRWSDGL HQAVEAKEGV QIEPENQTLA
SITFQNYFRM YPKLSGMTGT AATEAAEFFD IYKMNVVTIP TNRPIARIDE EDEFYKNIND
KFGAIARTIR EAQERGQPVL VGTVSIEKSE LLSSFLEKEG VAHSVLNARF HESEARIVAQ
AGRSGAVTIA TNMAGRGTDI KLGGNEEFRI EDELKDMPAG PERDAAEARI REEVAAEREA
VKAAGGLFVL ATERHESRRI DNQLRGRSGR QGDPGLSKFY LCLDDDLLRI FGPDTLFAKM
MNKNLEDGEA IGSKWLSKAI ETAQKKVEAR NYDIRKQVVE YDNVMNDQRK VIYEQRGEII
DSETVDDVMA AMRAETVNAI VADACPPGSY PEQWNVEGMK ERVANILNLH PPIDEWMQED
AVDPEMFEER LQRMADATAA EKAALVDAET WKGIEKSILL QTLDHHWKEH LATLDALRQV
VFLRAYAQKQ PINEYKQEAF ALFERMLSNI REDVTRTVAR IDFQFQEPEP MPLPELPDFL
TTHIDPFTGE DNSADVDAGS LGVIADTLPP MQVPKHDIAR GENPYAAMEI SRNAPCPCGS
GRKYKHCHGA I