| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1799 |
|---|
| Symbol | |
|---|
| ID | 4082190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1895819 |
|---|
| End bp | 1896394 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638010174 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_616844 |
|---|
| Protein GI | 103487283 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.279615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.998322 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGAA ACCCGAAAAG CCCGGCCCCT GCGTCACCCG ACGCCATCCC CGCGTCGATC
CGCGACCGGT CGATCGTGCT CGTCGGGCTG ATGGGATCGG GCAAGTCGAC CGTCGGCCGC
CGTCTTGCGC AGCGGCTGCG GATGCGCTTC GCCGATGCCG ACGACGAGAT CGAGCGCGCC
GCCGGCATGA CGATTGCGGA CATTTTCGCG CGCTTTGGCG AAACGCATTT CCGCGACGGC
GAGCGCCGCG TCATCGCGCG CCTGCTCGGC GGCAAGCCGA TGGTGCTCGC AACCGGTGGC
GGCGCCTTCA TCAATGACGA GACGCGCGCG CTGATCCTGA AGGACAGCCT TTGCATCTGG
CTCGACGCCG ACATTCCCAC GCTCGTCGAG CGTGTCGGCC GCCGCAGCCA CCGCCCACTG
CTCAAGGATC GCGACCCCGG CGAAGTGCTG CGCGAACTGG CGGCGGTCCG TAATCCCATC
TATGCCGAGG CGCATCTGCG CGTCAGTTCG GCAAGCACGC CGCACGAACA TACGGTGCGG
GCGATTCTGG AGGCCCTGGC AACATGGAAA AGCTGA
|
|---|
| Protein sequence | MSRNPKSPAP ASPDAIPASI RDRSIVLVGL MGSGKSTVGR RLAQRLRMRF ADADDEIERA
AGMTIADIFA RFGETHFRDG ERRVIARLLG GKPMVLATGG GAFINDETRA LILKDSLCIW
LDADIPTLVE RVGRRSHRPL LKDRDPGEVL RELAAVRNPI YAEAHLRVSS ASTPHEHTVR
AILEALATWK S
|
|---|
| |