| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1784 |
|---|
| Symbol | |
|---|
| ID | 4082251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1882384 |
|---|
| End bp | 1883958 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638010158 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_616829 |
|---|
| Protein GI | 103487268 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0136066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCGT GCCGCACGAC CATTGATGCC CTCTCGATCC GAGTATTGAT AATGACCCGA
TCTCGCCTGC TTGCGGCGCT TGCCGCACCT GTTCTGGCCC TGTCCTTGGC AGGGTGCGGA
TTGCTGTCCC CGGACGAACA GGCGGAGGCT GATGGCGGCG GCGGGATCGT GGTCACGCAT
TTTGCACCTT CGACCGAGCT GTTCGTCGAA TACCGCCCCT TGGTGCAGGG CAAGGACCGG
CGGTTCGATG CGCATCTCAC CTGGCTCGAC AGCTACAAGC CGGTGACCGA TGGCACGCTG
ACCGCCGAAC TGGTGTGGCC CGATGGCACG ATAGACACGG CCAAGGCCGG GCCGAGCGAC
GTCCAGGGCA TCTTCAGACC GCTGCTGAAG GCGTCCAAAA GCGGCAAGGC GCGGCTGCGC
TTGGTGCTGG GCAACCCCAA GGGTCAATCG GTTCACGATC TGGGCGAGGT CACCGTGTGG
GCCACGAGCG CAGAAGGCGC CAAGGCCGCT CCCGCCGAAG CCGAGGAGGA AGGCGCGGTC
GCTTTCTCCA AGGAAGTGCA ATGGCGCATC CCGTTCATGA CCACGGCGGC GCAGGTCACC
AATTTTGCCG AGACAGTGCC GGTCACTGTC GATGTCCAGA TCCAGCCCCA GGCCGAAGCG
ATTGTTTCAG CTCCGGTCGA CGGCATTCTG CGCGCGGCGA GGATGCCTGC TGCGGGCGAC
CGGGTGCGGC GCGGGCAGGT GCTCGCCAGC ATTTCTTCCA CTCTGGGTGG CGGCGAGGAT
GTTGCGACCC TTGATCTTGC CATCAACGAA GCGCGGATCG CCCGCGATGC GGCCGCGCGC
GAAGTCGCAC GCATGACGCA GCTGGTCGAA GCCGAAGCCG TGCCGGCACG GCGGCTCGAT
GAAGCGCGCA CCGCGTTGCG GATGGCTGAG GCGCAATTGC GGTCGGCTAG TCAGCGCCGT
TCAGCTGTGG CAGGCGGCGG CGCGGGCGTG CCGGTGGTTG CCCCAATCTC CGGGGAGGTG
CTCGATAGCG CCCTGGTGCA AGGCGCGGGC GTCACCGGCG GACAACGCTT GTTGCGGATC
GGCGATCCAG CGGCGCTGTG GCTGGTTGCC CGTGTGCCCG AAGCAATGGC GGCCATGGTC
GGGACACCCA ACGGGATCGA CCTGCAACTG CCCGATCGGG TGATCACGCT TGGCGATGGC
ACCGGCCAGC TGGTGCAGCG CGGTGCGGCG ATTGACCCAC AGACCCGCAC CCTTTCGGTG
ATCTATGCCT GGAACAGCCG CGCACTGCGC CCCGGCCAGC GGGTGCAGGG ACTGCTGCGC
ACCGGCTATG CGACACGGCG GCTGACCATT CCGGCCAGCG CCTTGCTCAA CGAAAGCGGG
CAGGATGTAG TCTACGTGCA GCTCGGCGGC GAAACCTTCC AGCGCCGCGC GGTCACCGTG
CTGGCGCGTA GCGGCACTCG GGTGGCGATA GAAGGCCAGC TCAAAGCAGG CGAACGGGTG
GTCACGCGCG GTGCGGCGGC GGTCAGAGCA GCAGCGGCGA CGCCCGATGC TTTCGGCCAC
GGCCATGCGC ATTGA
|
|---|
| Protein sequence | MNPCRTTIDA LSIRVLIMTR SRLLAALAAP VLALSLAGCG LLSPDEQAEA DGGGGIVVTH
FAPSTELFVE YRPLVQGKDR RFDAHLTWLD SYKPVTDGTL TAELVWPDGT IDTAKAGPSD
VQGIFRPLLK ASKSGKARLR LVLGNPKGQS VHDLGEVTVW ATSAEGAKAA PAEAEEEGAV
AFSKEVQWRI PFMTTAAQVT NFAETVPVTV DVQIQPQAEA IVSAPVDGIL RAARMPAAGD
RVRRGQVLAS ISSTLGGGED VATLDLAINE ARIARDAAAR EVARMTQLVE AEAVPARRLD
EARTALRMAE AQLRSASQRR SAVAGGGAGV PVVAPISGEV LDSALVQGAG VTGGQRLLRI
GDPAALWLVA RVPEAMAAMV GTPNGIDLQL PDRVITLGDG TGQLVQRGAA IDPQTRTLSV
IYAWNSRALR PGQRVQGLLR TGYATRRLTI PASALLNESG QDVVYVQLGG ETFQRRAVTV
LARSGTRVAI EGQLKAGERV VTRGAAAVRA AAATPDAFGH GHAH
|
|---|
| |