| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1752 |
|---|
| Symbol | |
|---|
| ID | 4081987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1845105 |
|---|
| End bp | 1846292 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638010127 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | YP_616798 |
|---|
| Protein GI | 103487237 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00607213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.281233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCC ATCCGTTAAT CGATACCAAT GCCGCGCTCC TCGAATTTTG CGATCGTGTC
AAGGACAGCG ATTTCATCGC CGTCGATACC GAATTCATGC GCGAAAACAC CTTCTGGCCC
GAACTGTGCC TGATCCAGGT CGCGGATACC GAACATGCCG CCGCGATCGA TCCGATGGCG
CAAGGCATGG ATTTGAAGCC GCTGCTCGAC CTGCTCGTCG ACAATGAGGA TATGCTGAAG
GTCTTTCACG CCGGGGGGCA GGATGTCGAA ATCATCTTCA ACCTGACCGG CAAGACGCCG
CACCCGATTT TCGACACGCA GATCGGCCAG ATGGCGCTCG GTCAGGCCGA ACAGGTCGGC
TATTCGAACC TCGTCGAGGC ATGGCTGGGC CTCCAGCTCG ACAAGGGCGC GCGCTTCACC
GACTGGAGCC GCCGCCCGCT CGACAAGCGG CAGATCGACT ATGCGATCGG CGACGTGACG
CATCTGGCGA AAATCTTTCC GATGATGCTC GACAAGCTGA TCAGGACCGG CCGCGGCCAC
TGGCTCGACG AAGAAATGGA GAAGCTCGCC GATCCCGCCA ATTACAGCGT CGATCCCGAC
AAGGCGTGGC AGCGGATCAA GATCCCGTCG CGCAAGCCCG ACGTGCTCGG TCGCCTGCGC
GCGCTCGCCG CGTGGCGCGA GCGCGAGGCG CGCAACAAGA ATCTGCCGCG CGGCCGCATC
GTCAAGGACG AGACGCTCGC CGACCTCGCC GCGCACCCGC CAAAGGACCA GGACGGGCTG
GGCCGCGTCC GCGGGCTGTC GGCAACGTGG AAAAGCAACG ACATCGGCGC GCGGCTGATG
GATGCGCTGA CGAACGCCAA GCCGCTCGGC AAGGACGATA TGCCCGACCG CGCGCCGCGC
GGGCCGGGGC TGGGCAAGGA GGGCGCACTC GTCGCCGACC TGCTCAAGCT GCTCCTGAAA
ATCCGCGCGC GCGAACTCAA CGTCGCGGCG CGACTGATCG CGCGGAGCGA CGACCTGGAG
GCGCTGGCGG CGGGTTCGCG CAAGGGCATC CCGATGATGG AGGGCTGGCG CTACGAGGTT
TTCGGTCACG CGGCGCTCGA CCTCGTCGAA GGCCGCATGG GCTTTGCGGT GAAGAACGGC
AAGCTGGTGA TGAGCGAGAT CGACGCGGCG GTGGCTGCCG AAACATGA
|
|---|
| Protein sequence | MQVHPLIDTN AALLEFCDRV KDSDFIAVDT EFMRENTFWP ELCLIQVADT EHAAAIDPMA
QGMDLKPLLD LLVDNEDMLK VFHAGGQDVE IIFNLTGKTP HPIFDTQIGQ MALGQAEQVG
YSNLVEAWLG LQLDKGARFT DWSRRPLDKR QIDYAIGDVT HLAKIFPMML DKLIRTGRGH
WLDEEMEKLA DPANYSVDPD KAWQRIKIPS RKPDVLGRLR ALAAWREREA RNKNLPRGRI
VKDETLADLA AHPPKDQDGL GRVRGLSATW KSNDIGARLM DALTNAKPLG KDDMPDRAPR
GPGLGKEGAL VADLLKLLLK IRARELNVAA RLIARSDDLE ALAAGSRKGI PMMEGWRYEV
FGHAALDLVE GRMGFAVKNG KLVMSEIDAA VAAET
|
|---|
| |