Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1751 |
Symbol | aspS |
ID | 4081986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1843032 |
End bp | 1844891 |
Gene Length | 1860 bp |
Protein Length | 619 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638010126 |
Product | aspartyl-tRNA synthetase |
Protein accession | YP_616797 |
Protein GI | 103487236 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0173] Aspartyl-tRNA synthetase |
TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.96886 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.294173 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTCGCC GACCTGCCTT AGGCGCGGCG ATAAATCACT TTAAACGTGA CATCCCCAAA TCTTCGAAAG ACCATGAAAT GCACGCCTAT CGCACCCATC ATTGCGGCCA GCTTCGCGCC GAGCATGTCG GCCAGACTGT TCGCCTGTCG GGCTGGGTGC ATCGCAAGCG CGATCATGGC GGGCTGCTCT TCGTCGATCT GCGCGACCAT TATGGTCTGA CGCAGATCGT CGTGGACTCG AGCGATGCCG CTTTCGCGAC GCTCGACGGC CTGCGCGCCG AAAGCGTCGT GACGATCACC GGCGACGTCG TCGCGCGTTC GGCCGAGACG GTGAACGCGA ACCTGCCGAC CGGCGCGATC GAGGTGCGCG CGCGCGAGGT GGCGGTGCAG TCGGCGGCGG CCGAGCTGCC GATGCCGGTC GCGGGCGAAC AGGAGTATCC CGAGGACATC CGCCTCAAAT ATCGTTTCCT CGACCTGCGC CGCGAGCGGC TGCACGCGAA CATCATGCTG CGCTCGAACG TTATCGCGTC GCTCCGCCGC CGCATGGTCG AACAGGGCTT TACCGAATAT CAGACCCCGA TCCTCACCGC CTCGTCGCCC GAAGGCGCGC GCGACTATCT GGTGCCCAGC CGCGTCCACC CCGGCAAATT CTATGCGCTG CCGCAGGCAC CGCAGATGTT CAAGCAGCTT CTGATGGTCG CGGGCTTCGA CCGCTATTTC CAGATCGCGC CCTGCTTCCG CGACGAGGAT GCGCGAGCCG ACCGTAGCCC GGGCGAATTT TATCAGCTCG ATTTCGAAAT GAGCTTCGTC ACCCAGGACG ACGTCTTCAA CGCGATCGAA CCCGTGCTCG CGGGCGTGTT CGAAGAGTTT GCGAACGGCA AGTCGGTGAC GCCCGCCGGC TCCTTTCCGC GCATCCCGTA CCGCGAGTCG ATGCTGAAGT ACGGCAACGA CAAGCCCGAC CTGCGCAACC CGCTGATCAT CAGCGACGTG TCGGCGCATT TCACCGGATC GGGCTTCGGC CGCTTCGCCG ACATCGTCGC GGCGGGCGAT GTCGTGCGCG CGATTCCCGC GCCCGCGACG GCCGACAAGA GCCGCAAGTT CTTCGACGAC ATGAACAGCT GGGCGCAGGG CGAAGGCTTT GCCGGCCTCG GCTATGCGAC GCGCAAGGGC GGCGAATGGG GCGGCCCGAT CGCCAAGAAC CACGGGGCGG AGAAAATGGA CGCGCTCGCC GCCGACCTCG GCCTCGGCCC CGACGATGGG TTGTTCTTCG CCGCGGGCAG GGAAGCGCAG GCGGCGAAGC TCGCGGGCCT CGCGCGCACC CGCGTCGCCG AGCAACTGGG CCTCATCGAC CCGAACAGGT TCGAAATGTG CTGGATCGTC GATTTCCCGA TGTTCGAGCG CGACGAGGAA ACGGGCAAGA TCGACTTCAG CCACAATCCC TTCTCGATGC CGCAGGGTGA GCTTGAGGCG CTCGAGACCA AAGACCCGCT CGACATTCTC GCCTGGCAAT ATGACATCGT CTGCAACGGC GTCGAACTGT CGTCGGGCGC GATCCGCAAC CATCGCCCCG ACATCATGTA CAAGGCGTTC GAAATTGCGG GCTATAGCCA GGCCGAGGTC GACGCCAATT TCGCGGGCAT GATCAACGCG TTCAAATATG GCGCGCCGCC GCATGGCGGG TCGGCGCCGG GGGTCGACCG CATCGTCATG CTGCTCGCCG ACGAGCCCAA TATCCGCGAA GTCGTCGTCT TCCCGATGAA CCAGAAGGCC GAGGACCTGA TGATGGGTGC CCCGGCGCCG GTATCAGAGA AGCAGCTCAG GGAACTCGGA ATCCGCATTG TCGACGGTCC GAAGAGCTAA
|
Protein sequence | MARRPALGAA INHFKRDIPK SSKDHEMHAY RTHHCGQLRA EHVGQTVRLS GWVHRKRDHG GLLFVDLRDH YGLTQIVVDS SDAAFATLDG LRAESVVTIT GDVVARSAET VNANLPTGAI EVRAREVAVQ SAAAELPMPV AGEQEYPEDI RLKYRFLDLR RERLHANIML RSNVIASLRR RMVEQGFTEY QTPILTASSP EGARDYLVPS RVHPGKFYAL PQAPQMFKQL LMVAGFDRYF QIAPCFRDED ARADRSPGEF YQLDFEMSFV TQDDVFNAIE PVLAGVFEEF ANGKSVTPAG SFPRIPYRES MLKYGNDKPD LRNPLIISDV SAHFTGSGFG RFADIVAAGD VVRAIPAPAT ADKSRKFFDD MNSWAQGEGF AGLGYATRKG GEWGGPIAKN HGAEKMDALA ADLGLGPDDG LFFAAGREAQ AAKLAGLART RVAEQLGLID PNRFEMCWIV DFPMFERDEE TGKIDFSHNP FSMPQGELEA LETKDPLDIL AWQYDIVCNG VELSSGAIRN HRPDIMYKAF EIAGYSQAEV DANFAGMINA FKYGAPPHGG SAPGVDRIVM LLADEPNIRE VVVFPMNQKA EDLMMGAPAP VSEKQLRELG IRIVDGPKS
|
| |