Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1732 |
Symbol | |
ID | 4081194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1822922 |
End bp | 1824961 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638010107 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_616778 |
Protein GI | 103487217 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0596592 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGCCA TGTTCTCGAT GCCCTCCCTG ATGCCCTCCC TTTCGCGCCT TGCGCTGACC CTGGCGCTCG CCCTGCCCAC CGCCGCCGCT GCCGGCGAAC TCACCCCCGA ACAAATGGCC TGGTACCGCG CCCAGATGGG TCTGGCGTCG GCATCGGGCC CGCCCCCCGC ACCCAGTTCG ATCGGCGAAG CCGTGATGGA GTGGCGGCGC CTCACCGCGA ACAGCGGCGC CTCCTTCGAT CAGCTGTCGC GCTTCCTGAT GGCGAACAAG GGCTGGCCCG ACACCGACAA GCTGCGCCTG CGGGCCGAAA AGGCGATTGC TCTCGACAGT TTCGATCCCG CGCGCACCCT CGCCTATTTC GCCGCCTATC CGCCACAGAC GGCCAGCGGC CATCTTCGCA TGGCAATGGC GCTGAACGCA TCGGGGCGGC GACAGGAAGC CCATGCCGCG GTGCGCCGCG CGTGGACCAG CGGGCCGCTC GACGATTATG AAACGAGCCG TGTGCTCGGC ATGTTCCCCG GCGCGCTGAC GCTCGCCGAC CATGATGCGC GCATGGACAA GCTGCTCTGG ATGGGCGCAA CCGCGGCGGC CAGCCGTCAG ATCGGCTATA CCTCGCCCGA AAAGCGCGCC GTCTTCGCCG CGCGCCTCGC GATGCGCAGC GGCGCGGTCG ATGCCGCGCT TCAGGCGTCG GCCGTCGAAA GCGCCAATCC GTCGATCGTC CGCACCGACC CCGGCTATAT CACCGACAAG GCGACGTGGC TCCGCGCGTC GGGTCGCGTA GGTGAAGCGC GCGCGCTGCT CGCCGCGCCG CGATCGCTGG CGCAGGCGCC GACCGATGCC GAGGAGTGGC TGGAAACCCT GCTCACCAAC GCACGGCTGG CCGAGAGCAG CGGCGACAAG CTGAGCGCCT TCAACATCGC GCGCCAGCTC GACGACGCAT TCCCCCCCGG CACCGTGATC CGCGAAACGC CGCTCGGGGT GCGCGACGAT TATACCTCGC TCGCCTGGCT GGCGGGCCAG CTTGCCTTCA GGGATCTCGG TCGCCCGGCC GACGCCGAGA AGCTCTACCG CGCCTATGGC GAAGCGGCAC GCTCGGCGCA GACGCGCACC AAGGGCTTCT ACTGGGCCGG CCGCGCCGCA CTCGCGGCAG GCGACCGCGA CGCGGCAAAC GCCCATTTCG CTGATGCGGC GCAGCATTAT GACCAATTCT ATGGCCAGCT GGCGCTCGAA CGGCTGGGCC GTCCGCAACC CCGACCGGCG CCCAATCCGA CGATCGAGGT CAGCGCCGAC GAACAGCGCG CGTTCGAGGA CGACCGGCTG GTCCGCGCCG CGCGCGCGCT GGGCGAAATC GGCGCCTGGC GCGAGCAGTC GCTGTTCCTC CGCGCGCTCG CGCAAAAGGC CAGCACGCCC GCCGACCATG TGCTCGCGGG CAAGCTCGCC GCGCAGATCG GCCGCCCCGA CCTCGGCGTG ATGATCGGCC GCAGCGCGCA GGCGAACAGC CTCGATGCGG TCGAGGTTTC GGGCTTCCCC ACCGTGCGTG TCCCCGCCGG GCACGAGGGC AACTGGACCT TCATCCACGC GATCACGCGG CAGGAAAGCC AGTTCGACCG CGCCGCGATC AGCCACGCCG GGGCGCGCGG CATGATGCAG CTGATGCCCG GCACCGCGCG CGAGGTCGCG GGCAAGCTGG GGCTGAGCTA CGACGGCGGC GCGCTCACCA CCGACACCAA CTACAATATG ACGCTCGGTT CGACCTATTT TCAGCAGATG CTGCGCTATT ATGGCGGCAG CTATCCGCTC GCGGTCGCGG CCTATAACGC CGGGCCGGGC AATGTGAACA AATGGCTGCG CGCCAATGGC GACCCGCGCA CCGGCGCCAT CGACATTCTC GACTGGATCG AGGCGATCCC GATCTTCGAG ACCAGAAATT ATGTCCAGCG CGTGCTCGAA AATGCCGTGG TCTACGACAC GCTGCGCGAC GGAAAGACGC TTCCCAGGGC GCCGCTGAGC TTCTATCTCG GCAAGCGCAC ACCGGGATAA
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Protein sequence | MAAMFSMPSL MPSLSRLALT LALALPTAAA AGELTPEQMA WYRAQMGLAS ASGPPPAPSS IGEAVMEWRR LTANSGASFD QLSRFLMANK GWPDTDKLRL RAEKAIALDS FDPARTLAYF AAYPPQTASG HLRMAMALNA SGRRQEAHAA VRRAWTSGPL DDYETSRVLG MFPGALTLAD HDARMDKLLW MGATAAASRQ IGYTSPEKRA VFAARLAMRS GAVDAALQAS AVESANPSIV RTDPGYITDK ATWLRASGRV GEARALLAAP RSLAQAPTDA EEWLETLLTN ARLAESSGDK LSAFNIARQL DDAFPPGTVI RETPLGVRDD YTSLAWLAGQ LAFRDLGRPA DAEKLYRAYG EAARSAQTRT KGFYWAGRAA LAAGDRDAAN AHFADAAQHY DQFYGQLALE RLGRPQPRPA PNPTIEVSAD EQRAFEDDRL VRAARALGEI GAWREQSLFL RALAQKASTP ADHVLAGKLA AQIGRPDLGV MIGRSAQANS LDAVEVSGFP TVRVPAGHEG NWTFIHAITR QESQFDRAAI SHAGARGMMQ LMPGTAREVA GKLGLSYDGG ALTTDTNYNM TLGSTYFQQM LRYYGGSYPL AVAAYNAGPG NVNKWLRANG DPRTGAIDIL DWIEAIPIFE TRNYVQRVLE NAVVYDTLRD GKTLPRAPLS FYLGKRTPG
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