Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1714 |
Symbol | secD |
ID | 4081291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1804090 |
End bp | 1805703 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638010088 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_616760 |
Protein GI | 103487199 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGATT TCCCGCGCTG GAAAACCATC GGCATCAGCA TCATCCTGCT GCTCGGCGTC CTTTTTGCCA TTCCCAGCTT CCTGCCGCCC AAGGCGTTCG AGAGCCTGCC CGGCTTTGCA CAGGCGAAGG TCAATCTGGG GCTCGACCTT GCGGGCGGCA GCCACCTGCT GCTCGAGGCC GACATCAACG ACCTGCGCAA GACGCAGCTT ACGAACATGG AAAAGACGGT GCGTACCGCG ATGCGCGGGC AGAGCGGGCC CGACGACGAC ATCGCGATCG GCGAATTGTC GACGACGGGC GGGCGGATCA GCTTCCTCGT CCGCGACGCC GCGAAGCTCG ACGCCGCGCG CGAGCGGCTG TTCAGCGAGA CGCAGGGCGC CGGGCTGACG GGCCAGCGCG ACTGGAATAT CGACGTCGTC GATTCGACGC GCATCGTGAT GAGCCCGACG AGCGCCGGGC AGACGCAGGC GGTGGCGAAC GCGATGGACA CCGCGCGCGA CATCATCGAC AAGCGCGTCA ACGCGCTCGG CACGCGCGAG CCAACGATCA TCCGCGAAGG CGCCGACCGC ATCGTCGTGC AGGTTCCGGG GCTTCAGGAC CCGGCCGCGC TGAAAGAACT GATCGGCAAG ACCGCGCGGC TCGAGTTCCG TATGGTCGAC GCCAACGCCG ACCCCGCCGA AGCCGCCGCG GGCCGCGTGC CGGTGGGCAG CGAAATCGTC CCCTATGCCG AGGGCGAGGG CAATGGCGCG GCGTTCGAGG TGCTGCGCCG TCAGGTGATG ATCAGCGGCG AGCAGCTCAT CAACGCGCAG CAAAGCTATG ACCCGCAGAC GAGCGAGCCG GTGGTGTCGA TCCGGTTCGA TTCGGCGGGG TCGAGCACCT TTGCCAAGGT GACGGCGCAG AATGTCGGCA AGCGGTTCGC GATGGTGCTC GACGGCAAGG TGCTGTCGGC GCCGTCGATC AACGAGCCGA TCCTGGGCGG CAGCGCTCAG ATTTCGGGCA GTTTCAGCGT CGCGAGCGCG AACAACCTCG CGATCTCGCT GCGATCGGGC GCGCTGCCGG TGAAGATGAC GGTGGTCGAG GAGCGCACGG TGACGCCCGA GCTTGGCGCC GATTCGATCC GCAAGGGCGC GATCGCGGGC ATCATCGCGA CCGTCGCGGT GCTCGCCTTC ATGATCATCG TCTATGGCCG CTTCGGCATC TATGCGAATG TCGCGCTGAT CTTCAACATC GGGCTGATCA TCGCGATCAT GGCGGCGTTC AATGCGACGC TGACGCTGCC GGGCATCGCG GGCTTCGTGC TCACCATCGG GGCCGCGGTC GACGCGAATG TGCTCATCAA CGAGCGTATC CGCGAGGAAC TGAAACGCGG GCGCCGCGTG TTCCAGGCGG TCGAGCTTGG CTATTCGGAA GCCAGCCGGG CAATTTTCGA CGCCAATATC ACCAACGTCA TCGCGGCGGG GCTGATGTTC TGGTTCGGCT CCGGGCCGAT CAAGGGCTTT GCGGTCGTGC TGACGATCGG CATCATCACC AGTGTGTTCA CCGCCGTCAC CGTGACGCGC CTGTTCGCCG CGCGCTGGTT GCACAAGACG CGCCCTGCGT CGCTGAACAT TTGA
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Protein sequence | MLDFPRWKTI GISIILLLGV LFAIPSFLPP KAFESLPGFA QAKVNLGLDL AGGSHLLLEA DINDLRKTQL TNMEKTVRTA MRGQSGPDDD IAIGELSTTG GRISFLVRDA AKLDAARERL FSETQGAGLT GQRDWNIDVV DSTRIVMSPT SAGQTQAVAN AMDTARDIID KRVNALGTRE PTIIREGADR IVVQVPGLQD PAALKELIGK TARLEFRMVD ANADPAEAAA GRVPVGSEIV PYAEGEGNGA AFEVLRRQVM ISGEQLINAQ QSYDPQTSEP VVSIRFDSAG SSTFAKVTAQ NVGKRFAMVL DGKVLSAPSI NEPILGGSAQ ISGSFSVASA NNLAISLRSG ALPVKMTVVE ERTVTPELGA DSIRKGAIAG IIATVAVLAF MIIVYGRFGI YANVALIFNI GLIIAIMAAF NATLTLPGIA GFVLTIGAAV DANVLINERI REELKRGRRV FQAVELGYSE ASRAIFDANI TNVIAAGLMF WFGSGPIKGF AVVLTIGIIT SVFTAVTVTR LFAARWLHKT RPASLNI
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