Gene Sala_1714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1714 
SymbolsecD 
ID4081291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1804090 
End bp1805703 
Gene Length1614 bp 
Protein Length537 aa 
Translation table11 
GC content66% 
IMG OID638010088 
Productpreprotein translocase subunit SecD 
Protein accessionYP_616760 
Protein GI103487199 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGATT TCCCGCGCTG GAAAACCATC GGCATCAGCA TCATCCTGCT GCTCGGCGTC 
CTTTTTGCCA TTCCCAGCTT CCTGCCGCCC AAGGCGTTCG AGAGCCTGCC CGGCTTTGCA
CAGGCGAAGG TCAATCTGGG GCTCGACCTT GCGGGCGGCA GCCACCTGCT GCTCGAGGCC
GACATCAACG ACCTGCGCAA GACGCAGCTT ACGAACATGG AAAAGACGGT GCGTACCGCG
ATGCGCGGGC AGAGCGGGCC CGACGACGAC ATCGCGATCG GCGAATTGTC GACGACGGGC
GGGCGGATCA GCTTCCTCGT CCGCGACGCC GCGAAGCTCG ACGCCGCGCG CGAGCGGCTG
TTCAGCGAGA CGCAGGGCGC CGGGCTGACG GGCCAGCGCG ACTGGAATAT CGACGTCGTC
GATTCGACGC GCATCGTGAT GAGCCCGACG AGCGCCGGGC AGACGCAGGC GGTGGCGAAC
GCGATGGACA CCGCGCGCGA CATCATCGAC AAGCGCGTCA ACGCGCTCGG CACGCGCGAG
CCAACGATCA TCCGCGAAGG CGCCGACCGC ATCGTCGTGC AGGTTCCGGG GCTTCAGGAC
CCGGCCGCGC TGAAAGAACT GATCGGCAAG ACCGCGCGGC TCGAGTTCCG TATGGTCGAC
GCCAACGCCG ACCCCGCCGA AGCCGCCGCG GGCCGCGTGC CGGTGGGCAG CGAAATCGTC
CCCTATGCCG AGGGCGAGGG CAATGGCGCG GCGTTCGAGG TGCTGCGCCG TCAGGTGATG
ATCAGCGGCG AGCAGCTCAT CAACGCGCAG CAAAGCTATG ACCCGCAGAC GAGCGAGCCG
GTGGTGTCGA TCCGGTTCGA TTCGGCGGGG TCGAGCACCT TTGCCAAGGT GACGGCGCAG
AATGTCGGCA AGCGGTTCGC GATGGTGCTC GACGGCAAGG TGCTGTCGGC GCCGTCGATC
AACGAGCCGA TCCTGGGCGG CAGCGCTCAG ATTTCGGGCA GTTTCAGCGT CGCGAGCGCG
AACAACCTCG CGATCTCGCT GCGATCGGGC GCGCTGCCGG TGAAGATGAC GGTGGTCGAG
GAGCGCACGG TGACGCCCGA GCTTGGCGCC GATTCGATCC GCAAGGGCGC GATCGCGGGC
ATCATCGCGA CCGTCGCGGT GCTCGCCTTC ATGATCATCG TCTATGGCCG CTTCGGCATC
TATGCGAATG TCGCGCTGAT CTTCAACATC GGGCTGATCA TCGCGATCAT GGCGGCGTTC
AATGCGACGC TGACGCTGCC GGGCATCGCG GGCTTCGTGC TCACCATCGG GGCCGCGGTC
GACGCGAATG TGCTCATCAA CGAGCGTATC CGCGAGGAAC TGAAACGCGG GCGCCGCGTG
TTCCAGGCGG TCGAGCTTGG CTATTCGGAA GCCAGCCGGG CAATTTTCGA CGCCAATATC
ACCAACGTCA TCGCGGCGGG GCTGATGTTC TGGTTCGGCT CCGGGCCGAT CAAGGGCTTT
GCGGTCGTGC TGACGATCGG CATCATCACC AGTGTGTTCA CCGCCGTCAC CGTGACGCGC
CTGTTCGCCG CGCGCTGGTT GCACAAGACG CGCCCTGCGT CGCTGAACAT TTGA
 
Protein sequence
MLDFPRWKTI GISIILLLGV LFAIPSFLPP KAFESLPGFA QAKVNLGLDL AGGSHLLLEA 
DINDLRKTQL TNMEKTVRTA MRGQSGPDDD IAIGELSTTG GRISFLVRDA AKLDAARERL
FSETQGAGLT GQRDWNIDVV DSTRIVMSPT SAGQTQAVAN AMDTARDIID KRVNALGTRE
PTIIREGADR IVVQVPGLQD PAALKELIGK TARLEFRMVD ANADPAEAAA GRVPVGSEIV
PYAEGEGNGA AFEVLRRQVM ISGEQLINAQ QSYDPQTSEP VVSIRFDSAG SSTFAKVTAQ
NVGKRFAMVL DGKVLSAPSI NEPILGGSAQ ISGSFSVASA NNLAISLRSG ALPVKMTVVE
ERTVTPELGA DSIRKGAIAG IIATVAVLAF MIIVYGRFGI YANVALIFNI GLIIAIMAAF
NATLTLPGIA GFVLTIGAAV DANVLINERI REELKRGRRV FQAVELGYSE ASRAIFDANI
TNVIAAGLMF WFGSGPIKGF AVVLTIGIIT SVFTAVTVTR LFAARWLHKT RPASLNI