Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1713 |
Symbol | |
ID | 4081290 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1803090 |
End bp | 1804073 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638010087 |
Product | SecF protein |
Protein accession | YP_616759 |
Protein GI | 103487198 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.24873 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTTGC TGAAACTCGT CCCCGACGAC ACCAATATCC AGTTCCTGAA GTGGCGCAAC GTAGCCATGG CGATCAGCTT GCTGATGATC GTCGCGTCGA TCGCGCTTGT CGCGGTGCGC GGCCTGAATC TTGGCGTCGA CTTTGTCGGC GGCCAGTCGG TGCGCGTCGA GTTCACCGGG GCGATGCCGC CGATCGACGA GATCCGCGAA AAGGTCGGCG CCATCGGCCT CGGCGAAGCG ACGATCCAGC AGTTCGGATC GGACAAGGCG GTGTCGATCC GCACCGCGCT GCCCGAAGGC GACAAGGCGG CTGCCGAACG CGCCGGGCAA CGGCTGGTCG CGGGCATTGC CGACGCCTTT CCCACCGCGA AGACCGGATC GGTCGAAACC GTGTCGGGCA AGGTGTCGGA GGAACTGCTG CGCACCGGGG CGCTCAGCCT GATCCTCGCG ATGATCGCCA TCTCCATCTA TATCTGGATC CGCTTCGAAT GGCAGTTCGG CGTCGGTGCG CTGTTCGCGC TGTTCCACGA CGTCACGCTG ACCTTTGGCT TCTTTGCGCT GACGCAGATG CAGTTTGACC TCAACATCGT CGCCGCGCTG CTCACCATCA TCGGTTATTC GCTCAACGAC ACGATTGTCG TGTTCGACCG GATTCGCGAA AATCTGAAGA AATATCGCAA GATGGAGATC ATCCCGCTGC TCGACCTCAG CGTCAACGAA ACGCTGGCGC GCACCGTGAT GACCAGCTTC ACCATGCTGA TCGCGCTGGC GGTGCTGCTG TGGGTCGGGC CCGACGTGAT CTTCGGCTTC ACCGCGGCGA TGCTGCTCGG CATCTTTGTC GGCACCTATT CGTCGGTCTA TATGTCGGCG CCGATCCTCG TGTGGCTGAA AGTCGGTCCC CACAGCTTCG TGCCGCGCAC CACGGCGGTG ACCGAAGGCG CCGAGCGGGT GTCGAACAGG AACGACGACG GCGCGGTGGT TTGA
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Protein sequence | MRLLKLVPDD TNIQFLKWRN VAMAISLLMI VASIALVAVR GLNLGVDFVG GQSVRVEFTG AMPPIDEIRE KVGAIGLGEA TIQQFGSDKA VSIRTALPEG DKAAAERAGQ RLVAGIADAF PTAKTGSVET VSGKVSEELL RTGALSLILA MIAISIYIWI RFEWQFGVGA LFALFHDVTL TFGFFALTQM QFDLNIVAAL LTIIGYSLND TIVVFDRIRE NLKKYRKMEI IPLLDLSVNE TLARTVMTSF TMLIALAVLL WVGPDVIFGF TAAMLLGIFV GTYSSVYMSA PILVWLKVGP HSFVPRTTAV TEGAERVSNR NDDGAVV
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