| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1712 |
|---|
| Symbol | |
|---|
| ID | 4081289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1801740 |
|---|
| End bp | 1802906 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638010086 |
|---|
| Product | glycosyl transferase, group 1 |
|---|
| Protein accession | YP_616758 |
|---|
| Protein GI | 103487197 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.170704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCCC TTCGCATCCT GTCGATCGCC ACCCTGTTTC CCGACGCCGC GCGGCCCAGT
TTCGGCCTGT TCGTCGAAAA GAGCCTCCGC GCGCTCGCGG CACAGCCGGG TATCGAACTC
ACCGTCGCGG CGCCGCTCGG CCTGCCGCCC TTCCCGCTTT CGCTGCACCG GCGTTACCGC
GCGCTGCGCG ATCTGCCGCG CTCCGAAACG TGGAACGGCC TCGCGGTCCT GCGCCCGCGC
TTCCCGCTGA TTCCCAAGGT TGGCGCCCGC TTCAACCCCG CGGCCATCGC GCGCGCCGTG
CTGTCGGCCG TTCGGGACCG GGAGTTCGAC GTGATCGACG CGCAATTTTT CTACCCCGAC
GGCCCCGCCG CGATGCGCGT CGCGGGCGCG CGCGGCCTGC CCTTCTCGAT CAAGGCGCGC
GGCGCGGACA TCGGCCATTT CGGCCATGCC CCAGCAACGG CAGCGCAAGT GGCCGCCGCC
GCCGCCAAAG CCGCCGGGCT GCTCGCCGTG TCGGAGGCGA TGCGCCGCGA CATGGCGGCG
ATCGGCATCG ATCCGGCCAA GGTCGCGGTC CATTATACGG GCATCGACGC CACGCGCTTT
CATCCGGGCG ACCGCGCCGC GGCGCGCGCC GCGCTCGGCA TCGACGATGC GCCCGCGATC
CTCTCGGTCG GCGCACTCAT TCCGCGCAAG GGGCAGGCGC TGGTGATCGC CGCGCTGCCC
GCGCTCCCCG GCGTCCATTA TTGGCTCGCC GGCGCGGGCG AGGAGGAAGG CCGCTACCGC
GCGCTCGCCC GCCGGCATGG GGTCGAGCCG CGCGTGCATT TCATGGGTCC GGTCGCCAAC
GCCGACCTGC CGCAGCTTTA CCGCGCCGCC GACGTCGTCG TCATGCCCTC GGCCAGCGAG
GGTCTGGCCA ATGCGTGGGT CGAGGCGCTC GCCTGCGGCA CCCCGATCGT CATCAGCGAC
GCGGGCGGCG CCGCCGAGCT TGTCACCGCG CCCGCGGCGG GCCGCATCGT GACACGCACG
CCGGGCGCGA TCGCCGAAGC GGTGCAGGAG ATCCTCGCCG CCCCGCCCTC ACCGACCGAC
GTGGCCGCGA GCCTCGACGG CCGCTTCGAC TGGAACCGCA ACGGCCGCGA ATTGGCCGAG
CATCTGCGGC GCTGCGCAGG GTTTTAA
|
|---|
| Protein sequence | MTPLRILSIA TLFPDAARPS FGLFVEKSLR ALAAQPGIEL TVAAPLGLPP FPLSLHRRYR
ALRDLPRSET WNGLAVLRPR FPLIPKVGAR FNPAAIARAV LSAVRDREFD VIDAQFFYPD
GPAAMRVAGA RGLPFSIKAR GADIGHFGHA PATAAQVAAA AAKAAGLLAV SEAMRRDMAA
IGIDPAKVAV HYTGIDATRF HPGDRAAARA ALGIDDAPAI LSVGALIPRK GQALVIAALP
ALPGVHYWLA GAGEEEGRYR ALARRHGVEP RVHFMGPVAN ADLPQLYRAA DVVVMPSASE
GLANAWVEAL ACGTPIVISD AGGAAELVTA PAAGRIVTRT PGAIAEAVQE ILAAPPSPTD
VAASLDGRFD WNRNGRELAE HLRRCAGF
|
|---|
| |