Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1698 |
Symbol | |
ID | 4081101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1788271 |
End bp | 1789713 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638010072 |
Product | carotenoid oxygenase |
Protein accession | YP_616744 |
Protein GI | 103487183 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.459113 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAGCC AGGTCGAAAC ACTGATCCGC AGCGCCGTCG TCAAAACCAT CGGCAAGGTC GCCGATTTCA ATCGCCGCCG CCTCCCCCGC CCCACCGACG CCCACCCCTT CCTCTCCGGC ATCCACAGGC CGATGACCGA AGAATTGACG ATCGAGGCGC TGCGCGTCGA TGGCGAAATC CCGGCCGCGC TACGCGGCCG TTACCTGCGC AACGGCCCGA ATCCGGCAAT GCCGCCCGAT CCCGCCAGCT ATCACTGGTT CATCGGCGCC GGCATGGTCC ACGGCATCCG CATCGAAGGC GGCCAGGCCG TCTGGTATCG CAACCGCTGG GTGCGTGGCA GCGAGGCGTG CGCTGCGCTT GGCGAGGAGC TGCCGCCCGG CCCGCGCGAA GAGCGCAACG ACGCGCCGAA CACCAATGTC GTGGGTCTCG CCGGGCGGAC GTTCGCAATC GTCGAGGCGG GCGGCACGCC GGTCGAGCTC GATCATGAGC TCGGCACCAT CGCGCATAAC CCTTTCGACG GCACCCTCGC GGGTGCGTTC ACCGCGCACC CACACGCCGA CCCCTTCACC GGGGAAACGC ACGCGATCAC CTATCGCAGC GACGAACCGA ACAAGGTCTG GCACGTCGTG CTCGACGAAC AGGCGCATGT CGTGCGCGAA GAACCGATTG CGGTCAGCGA CGGCCCCTCG ATCCACGACT GCGCGCTGAC CGAAAATTAC GTGCTCGTCT TCGACCTGCC CGTTACTTTC TCGATGAAAC GGCTGCTCGC AGGTTATCGT TTTCCCTATA TGTGGAACGA AAATCACCCG GCGCGCGTCG GCCTGCTCCC GCGCGAGGGC CGTGGCGACG ACATCGTCTG GGTGCCGGTC GATCCCTGCT ATGTCTTTCA CCCCGCCAAC GCCTTTGAAA CCGCGGACGG CCGGGTGATC GTCGATGTCG TCGCGCACGA AACGATGTTC GCCACGTCGA AGCGCGGCCC CGACAGCGAA AAGTCGCGCA TGGAACGCTG GACGATCGAT CCCGTCGCGC GCACGACGAC ACGCACCGTG ATCCACGACC ATGCGCAGGA GTTTCCGCGC TATGACGAGC GGCTGACGAC GCGGCCCTAT CGCTATGTCT ACAGCATCGC GATCCCCGAC GGCCGTTCAG CCGAATGGGC GCTCGCCGAT ACCCGGCTGT TCCGCCACGA TCTCGAAACG GGCACGACCG CCATCCACGA CTTCGGCTCC GGCCGCCACC CCGGCGAGTT TGTATTCGTT CCGCGCAAGG CGGCGGGCGC CGAGGATGAC GGCTGGCTGA TCGGCCTCGT CGTCGACATG AACGACGAGA CCACCGACCT CGTCATCCTC AACGCCGACG ATTTCACCGG GCCGCCGCAA GCCGTCGTCC ATCTGCCGCA CCGCGTTCCG CCGGGGTTTC ATGGCAATTG GGTCGCGGAC TGA
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Protein sequence | MASQVETLIR SAVVKTIGKV ADFNRRRLPR PTDAHPFLSG IHRPMTEELT IEALRVDGEI PAALRGRYLR NGPNPAMPPD PASYHWFIGA GMVHGIRIEG GQAVWYRNRW VRGSEACAAL GEELPPGPRE ERNDAPNTNV VGLAGRTFAI VEAGGTPVEL DHELGTIAHN PFDGTLAGAF TAHPHADPFT GETHAITYRS DEPNKVWHVV LDEQAHVVRE EPIAVSDGPS IHDCALTENY VLVFDLPVTF SMKRLLAGYR FPYMWNENHP ARVGLLPREG RGDDIVWVPV DPCYVFHPAN AFETADGRVI VDVVAHETMF ATSKRGPDSE KSRMERWTID PVARTTTRTV IHDHAQEFPR YDERLTTRPY RYVYSIAIPD GRSAEWALAD TRLFRHDLET GTTAIHDFGS GRHPGEFVFV PRKAAGAEDD GWLIGLVVDM NDETTDLVIL NADDFTGPPQ AVVHLPHRVP PGFHGNWVAD
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