| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1695 |
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| Symbol | |
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| ID | 4081098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1785381 |
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| End bp | 1787165 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010069 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_616741 |
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| Protein GI | 103487180 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG3447] Predicted integral membrane sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.357203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGGT CGCTGTCCCC CAGAGTCGAA GCGGTCTTTT GGTTCCTGTT GACCGTCACA
GGCTATTATC TGCTCGCGAG CCTGTCGCTC TATGCGACGC GGGGCGCCGA CAATATCGCT
GCGGTTTGGC CGGCAAGCGG ATATATCCTG GCGTTGTTGC TGCTCATGCC CGCCCGGGGG
CGCGTGCCAG CCTTTGCCGG CATGGCCGTC GCCAGCATCG CGGCCAACAT GGGCGCGACG
ACGCCATTTT GGACGAGCCT CTCCTTCACT TTCGCGAACA TGGTCGAGGC GATCATCGCG
TTATGGCTGA TCCGGCGCCA TGAGCCCGGC GAACTGTCGT TCATGGCGCC GCGCGCCGTC
ATCCATTTTT GCGTCGCGGC GGTGGCCGCC AGTCTGGTCG GCGCGGGGCT GGCGACGCTG
CTGGCCGGTC GCGGCGGCGA TTTCTTCCTG TCGTGGGCGA CGACGGTGTT GCTCGGCATG
TTGATCGTGA CGCCGCCGAT CGTGATGCTG ACACGGATGA TGGAGTTGAA GGCATTCGGC
AAGGTGCCGC GCGCGATGCT GGTCGAGGCG ACGGCGATAC TGACCGGCGC CGGTGCCGTC
ACGATCCTCG TCTTTTCGCA GTCACATTTT CCCGCGACCT TCCTGCCGTC CATCGCGGTG
GTCGCGGCCG CCTATCGGCT CGGGCCTTTC GGCGCGGCGG CGGGGATGCT GATCGTCACG
ATCATCGCAT CGCTCCTGTC GGGGCAGGGT TATGGGCCGA TGGCGGCGAT CGACAGCGAT
CCGAAGGTCA AGGTGTTGTT CCTGCAATTC TATCTGCTGT CGCTGCTGCT GGCGGCGTTG
CCGCTCGCCG CATTGCTGAT CGGTCGCCAG CGGCTCGCCA GGCGTCTCGA GCAAAGCAAC
CGCTGGCTGC TCCAGGCCGA AGCTGCGGCG CTCGTCGGCC ACTGGCGCGT CAATCTGGTC
GACTGGACGA TCTATTGGTC CGACCAGACC TATCGCATAC ACGGGCTGGA ACCCGGAACG
CCCGTCGACG TCGATTACAG CGTCCGTCAA TATCTGGCCG AAGATCGCGC CGCAGTGCAA
CGGGTGCTTG AAGAGGCAGT GCGGTCGGGC GAACCCTTTG AGTTCCATGG CCGTATCCTG
CGCGCTGACG GGCAGGTGCG CCACGTCAAG TCGCACGGGT CTATCGAAAG GGGCCGCGGC
GGGGGCGCGA CGGGTATCTT CGGCACAGTG CAGGATGTAA CCGAAACCGT CGAGAATGCC
CGCATCCTGG AGGCCGCACG GAGCGCCGCC GAACGTGTCG CCAACACCGA CATGCTCACC
GGCCTGCCCA ATCGGCGCCA TACGCTGACC TTTCTCGAAG AGGCGATGGC CGGCGCGCGC
GCGCATGGCG CGCCGTTGGC GGTGGCGATC TTTGACATCG ACCATTTCAA GCGGATCAAC
GACACGCACG GCCATGCGAC CGGCGACCAG GTGATCCAGC GCGTCGCACA GCGCGCCAGA
TCGGTGCTGC GCGACGAGGA CATGATCGGC CGCATCGGCG GCGAGGAGTT TGTCTGCATC
CTTCAGCGCG CGAGCGCGCT GTCGGGCGAG ATCGTCGCCG AGCGCGTGCG CAAGGCGGTC
GAGAACGGGG TCGGCCAGGG CGACGGGCTG CCGCCGACGA CCGTCAGCAT CGGGCTGGCG
GTCTATGACG GCGAACAGGA TATCGAGGAA CTGCTGCACC GTGCCGACCA GGCACTTTAT
GCGGCGAAAC GCGAGGGGCG CAACCGGATG CGGCGCGCGG CGTAG
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| Protein sequence | MIRSLSPRVE AVFWFLLTVT GYYLLASLSL YATRGADNIA AVWPASGYIL ALLLLMPARG
RVPAFAGMAV ASIAANMGAT TPFWTSLSFT FANMVEAIIA LWLIRRHEPG ELSFMAPRAV
IHFCVAAVAA SLVGAGLATL LAGRGGDFFL SWATTVLLGM LIVTPPIVML TRMMELKAFG
KVPRAMLVEA TAILTGAGAV TILVFSQSHF PATFLPSIAV VAAAYRLGPF GAAAGMLIVT
IIASLLSGQG YGPMAAIDSD PKVKVLFLQF YLLSLLLAAL PLAALLIGRQ RLARRLEQSN
RWLLQAEAAA LVGHWRVNLV DWTIYWSDQT YRIHGLEPGT PVDVDYSVRQ YLAEDRAAVQ
RVLEEAVRSG EPFEFHGRIL RADGQVRHVK SHGSIERGRG GGATGIFGTV QDVTETVENA
RILEAARSAA ERVANTDMLT GLPNRRHTLT FLEEAMAGAR AHGAPLAVAI FDIDHFKRIN
DTHGHATGDQ VIQRVAQRAR SVLRDEDMIG RIGGEEFVCI LQRASALSGE IVAERVRKAV
ENGVGQGDGL PPTTVSIGLA VYDGEQDIEE LLHRADQALY AAKREGRNRM RRAA
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