Gene Sala_1689 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1689 
Symbol 
ID4081092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1778201 
End bp1779730 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content69% 
IMG OID638010063 
Producthistidine ammonia-lyase 
Protein accessionYP_616735 
Protein GI103487174 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGTTG TGACGATCAC CCCCGGCGCG ATGAGCTTCG CCGACTGGCG TGCGATTTAC 
GAAGGCGCGA GTGCCGCGCT GACCGTGGGT GCATGGGATG CGATCGACGC CAGCGCCGCG
GCGGTGGCGC GGATCGTCGC CAAGGGCGAT CCCGTCTATG GCATCAACAC CGGCTTTGGA
AAGCTCGCGA GCGTGCGGAT CGCGAGCGAC GATCTAGCGA CGCTCCAGCG CAACATCGTG
CTCAGCCATG CCGCGGGCAC CGGTGCTCCC TCCCCTACCC CTGTCGTCCG ACTGATGATG
GCGCTCAAGC TCGCGAGCTT CGGCGTCGGC GCGTCCGGCG TGCGGCGCGA AACGGCGGCG
ATGCTGGAGG CGATGCTCGC GCGGGGGCTG ATCCCGGTCG TGCCGTCGCA GGGTTCAGTC
GGCGCGAGCG GCGACCTTGC GCCGCTGGCG CATATGGCCG CGGCGATGAT CGGCGTCGGC
AAGATCGACG TCGGCGGCGC GATCATGCCC GCCGCCGAAG CGCTCGCGCA GGCCGAGCTG
ACGCCGCTCG AACTTGGCCC GAAGGAAGGA CTCGCGCTGC TCAACGGCAC ACAGTTTTCG
ACCGCGAACG CGCTTGCGGG CCTGTTCCGT GCCGAAACCC TGTTCCGCTC GGCGCTGATC
ACCGGGGCGC TCTCGACCGA AGCCGCCAAG GGTTCCGACG CGCCCTTCGA CCCCCGCATC
CACGCGCTGC GCGGTCATAT CGGCCAGCGC GAGGTCGGCG GCGCGCTCCG CACCCTGATG
GCGGGGTCGG CGATCCGCGC CTCGCACGCC ATCGACGATC CGCGCGTGCA GGATCCCTAT
TGCCTGCGCT GCCAGCCGCA GGTGATGGGC GCGGTGCTCG ACCTGCTGCG TCAGGCGGGG
GCGACGCTCG GCGTGGAGGC GAATGGCGTC TCGGACAATC CGCTGATCTT CGCCGATAGC
GACGAAGCCT TGTCGGGCGG CAATTTTCAC GCCGAACCGG TGGCTTTCGC CGCCGATATG
ATCGCGATCG CCTTGTGCGA AATCGGCTCG ATCGCCGAGC GCCGCATCGC GATGCTCGTC
GATCCCGCGC TGTCGGGCCT GCCTGCCTTC CTGACGCCGC GCCCCGGCCT CAACTCGGGC
TTCATGATCC CGCAGGTCAC CGCTGCGGCG CTGGTCAGCG AAAACAAGCA GCGCGCCTAT
CCCGCCAGCG TCGATTCGAT CCCGACCTCG GCGAACCAGG AGGATCATGT GTCGATGGCC
GCGCACGGCG CGCGCCGCCT GCTCGACATG GCCGACAATG CCAGCGCGGT GATCGGCATC
GAACTGCTGG CCGCGTGTCA GGGGATCGAC TTTCACGCGC CGCTCAAATC GAGCGACGCG
CTCGAGGCGG CGCACCGGCA TCTGCGCTCG CACGTCCCGA CGCTCGACGA CGACCGGCAT
TTCCACCCCG ACATGGAAGC CGCGACGGCA TTGATCCGTT CGGGCAGCCT CGTCGCCGCG
GTGCCGGCCA GCCTGCCGGG CGTCGGCTGA
 
Protein sequence
MTVVTITPGA MSFADWRAIY EGASAALTVG AWDAIDASAA AVARIVAKGD PVYGINTGFG 
KLASVRIASD DLATLQRNIV LSHAAGTGAP SPTPVVRLMM ALKLASFGVG ASGVRRETAA
MLEAMLARGL IPVVPSQGSV GASGDLAPLA HMAAAMIGVG KIDVGGAIMP AAEALAQAEL
TPLELGPKEG LALLNGTQFS TANALAGLFR AETLFRSALI TGALSTEAAK GSDAPFDPRI
HALRGHIGQR EVGGALRTLM AGSAIRASHA IDDPRVQDPY CLRCQPQVMG AVLDLLRQAG
ATLGVEANGV SDNPLIFADS DEALSGGNFH AEPVAFAADM IAIALCEIGS IAERRIAMLV
DPALSGLPAF LTPRPGLNSG FMIPQVTAAA LVSENKQRAY PASVDSIPTS ANQEDHVSMA
AHGARRLLDM ADNASAVIGI ELLAACQGID FHAPLKSSDA LEAAHRHLRS HVPTLDDDRH
FHPDMEAATA LIRSGSLVAA VPASLPGVG