| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1686 |
|---|
| Symbol | |
|---|
| ID | 4081089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1774937 |
|---|
| End bp | 1775617 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638010060 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_616732 |
|---|
| Protein GI | 103487171 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCG CGCGGCGCAT CCGCGATGAA ATCGCCGCCG CGATCCGCGC GGGCGAATGG
CGCCCCGGCG ACCGTGTGCC GATCGAGCAG GACCTTGCCG CGCACTATGG CTGCGCGCGC
GCGACGGTGA GCAAGGCGCT TGGCGAGCTC GCCGCCGCCG GGCTGATTGA GCGCCGTCGC
AAGGCGGGGA CGTTCGTCGC GCATCCGCCG GTCCATTCGG CGGTGATGAC GGTGCCCGAC
CTCGCCGAAC TGATCGCCGC ACGGGGCGAG GCCTATGGCT GGACGCTGAA AGCAACGCGC
ACCGAAGCGG AGGGCGCCGC GCTGTGCCCC GCCCCCGCGC TATACGTCGA GGGCGTGCAT
TTTGCGGCGG GGGAGCCCTT CGCGCTCGAA GCGCGCTTCA TCGCGCTCGG CGAAGTGCCC
GACGCAGCGA GTGCCGATTT TCGGTCGGAG GCGCCTGGCA CCTGGCTGCT TGGCCATATT
CCGTGGACCG AGGCGCGGCA TGTGATCCGC GCGGTGACGC CGACGCGGGC GGAGGCGGCG
CAATTGGGTG TCGGGACGTG CGCCGCCTGT CTCGAACTCG ACCGCACCAC CTGGCGCGCG
GGGCGGATTG TCACCCACGT CAGGCAGTTG TTCCGCGGCG ACCGCTTCGA CCTCGTCGCC
CAATTCAACG CCGGGGCGTG A
|
|---|
| Protein sequence | MNPARRIRDE IAAAIRAGEW RPGDRVPIEQ DLAAHYGCAR ATVSKALGEL AAAGLIERRR
KAGTFVAHPP VHSAVMTVPD LAELIAARGE AYGWTLKATR TEAEGAALCP APALYVEGVH
FAAGEPFALE ARFIALGEVP DAASADFRSE APGTWLLGHI PWTEARHVIR AVTPTRAEAA
QLGVGTCAAC LELDRTTWRA GRIVTHVRQL FRGDRFDLVA QFNAGA
|
|---|
| |