| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1648 |
|---|
| Symbol | |
|---|
| ID | 4080726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1730852 |
|---|
| End bp | 1731205 |
|---|
| Gene Length | 354 bp |
|---|
| Protein Length | 117 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638010021 |
|---|
| Product | excinuclease ABC subunit C |
|---|
| Protein accession | YP_616694 |
|---|
| Protein GI | 103487133 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2827] Predicted endonuclease containing a URI domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.732413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGAAGG GCCGTTCTTC CTTTTACACC GTGCCCATGA GCTTTTGGGC CTATATGTTG
CATTGCCGCG GAGGGGCCTT TTACACCGGT CACACGGACA ATCTCCCATA TCGTGTCGCG
CAGCACGAAT CCGGCGCCAT CCAAGGGTTC ACGGCGGACA AATTGCCAGT GACGCTCGTG
TGGAGTCAGG AGTTTCCGAC GCGGATCGAA GCCTTGGAAG CCGAACGCCG GATTAAGGGG
TGGAGCCGCG CGAAAAAAAT GGCATTGATC CGCGGCGATT GGGACAGCAT TTCGAACTTG
GCAAAAGGGA AGAACGGTCC TTCGACAGGC TCAGGACGAA CGGAGAGGGA CTGA
|
|---|
| Protein sequence | MSKGRSSFYT VPMSFWAYML HCRGGAFYTG HTDNLPYRVA QHESGAIQGF TADKLPVTLV
WSQEFPTRIE ALEAERRIKG WSRAKKMALI RGDWDSISNL AKGKNGPSTG SGRTERD
|
|---|
| |