| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1606 |
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| Symbol | |
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| ID | 4082758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1683270 |
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| End bp | 1685591 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638009975 |
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| Product | AAA family ATPase, CDC48 subfamily protein |
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| Protein accession | YP_616652 |
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| Protein GI | 103487091 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | [TIGR01243] AAA family ATPase, CDC48 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.168179 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.400051 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCGAAG CAGTGGTAAA AGAAAAACAG GTCAAATTGC AGGTCGCGAA CGCCCGCGCG
GAGGAAAGCG GTGGCGGGAT CGCGCGCATC CCGCGCGCGG CGATGGCCGA GCTGGGCCTC
AGCGAAGGCG ACGTCGTGCA GATCAGCGGC AAGCGCGACA CGGCATCGCG CGTCGTCGCG
CCCTATCCCG AGGATGAGGG GCTGAACGTC ATCCGCCTTG ACGGCCTGCA GCGGGCCAAC
GCCGGCGCTG GCGCGGGTGA TATGGTGGTT CTGAGCCGCG TCGAAACACG CCCGGCAACG
CGCGTCGTCT TTGCGCCCGC GCAGGAAAAT CTGCGCCTGC AAGGCTCGGC GAACGCGCTC
AAGCGCAGCT TTTTCGGCCG CCCGCTCGTC GCGGGCGATA CGGTCGCGAC CGCGGGGCAG
CAGCGCGTTT CCGCCGGTGA CATGCCGCCG CAACTGCGCC AGATGCTCAA CGCCCCGGCC
TATGCGCTGG CCGAGGTGCG GTTGCTCGTC GTGTCGGCGA GTCCCAAGGG CGTCGTCACG
ATCGACGAGA ATACCGAGGT CGAGCTGCTC CCCGAATATC AGGAACCGCA CGACGCGCGT
CGCACCGACG TCACCTATGA CGATCTGGGC GGCCTTGGCG AGACGATCGA CCAGCTGCGC
GAGATGGTCG AGCTGCCGCT GCGCTATCCC GAACTTTTTC GCCGCCTCGG CGTCGATCCG
CCGCGCGGTG TGCTGCTGCA CGGTCCGCCG GGAACCGGCA AGACGCGGCT CGCCCGCGCC
GTCGCGAACG AGAGCGAGGC GCAATTCTTC CTGATCAACG GGCCCGAGAT CATGGGCAGC
GCCTATGGCG AATCCGAAAA GCGGCTGCGC GACATTTTCG AGGCTGCGGC CAAGGCGGCG
CCGTCGATCC TGTTCATCGA CGAGATCGAT TCGATCGCGC CGAAACGCGG ACAGGTGCAT
GGCGAGGCCG AAAAGCGCCT CGTTGCGCAA TTGCTCACGC TGATGGACGG GCTGGAGCCA
CGCACCAACC TGGTCGTGAT CGCCGCGACC AACCGCCCCG ACGCGATCGA CGAAGCGCTG
CGGCGGCCGG GCCGGTTCGA CCGCGAGATC GTGATCGGAG TCCCCGACGA GAAGGGACGG
CGCGAGATAT TGGGTATCCA CACGCGCGGT ATGCCGCTGG GCGACGATGT CGACCTCGAC
GAACTGGCGC GCACGACCTT TGGCTTCGTT GGCGCCGACA TGGCCGCGCT GACCCGCGAA
GCGGCGATCG AGGCGGTGCG GCGGATCATG CCCAGGCTGA ACCTCGAGGA CGGGACCATC
CCGTCCGAGG TGCTCGACGA ACTCAGCGTG CTGCGCGCCG ACTTCAACAA TGCGCTGAAG
CGCGTCCAGC CGTCGGCGAT GCGCGAGGTA ATGGTGCAGG CGCCCAAGAC CCGCTGGAGC
GACATCGGCG GGCTCGACGC GGCGCGTGAC AAGATGATCG AGGGTATCGA ACTGCCGCTG
AAGCACCCCG AAGCCTTTCG CCGTCTCGGC ATCCGCCCGG CCAAGGGTTT CCTGCTCTAT
GGCCCGCCGG GCACCGGCAA GACGCTGCTC GCGAAGGCGG CGGCGCGCGA ATCGGACGCC
AATTTCATCG CGATCAAATC GTCGGACCTG CTCTCCAAAT GGTATGGCGA GAGCGAACAG
CAGATCGCGC GCCTGTTCGC GCGCGCCCGC GCGGTCGCCC CGACGATCAT TTTCATCGAT
GAACTCGACA GCCTGGTCCC CGCGCGCGGC AGCGGCACGT CGGGCGAGCC GCAGGTGACC
GAGCGCGTCG TCAATACGAT CCTCGCCGAA ATGGACGGGA TCGAGGAGAT GCAGTCGGTC
GTCGTGATCG GTGCGACCAA CCGCCCGAAC CTGATCGACC CCGCGTTGCT GCGCCCCGGA
CGGCTCGACG AACTGATTTA CGTGTCGGTG CCCGACCGCG AGGGGCGGCG GCGCATCCTG
GAAATCCAGA CTGGCAAGAT GCCGCTGGCA GGCGATGTCG ACCTTGCGCT GTTGGCGGAA
CGGACCGCGC GCTTCACTGG CGCCGACCTG GAAGACCTGT CGCGCCGCGC GGGGCTGGCG
GCGCTCAAGC GCTCGATCGG CGCCGACACG GTCACGATGG CCGATTTCGA GGCGGCGCTG
AAAGATACGC GGGCTTCCGT GACCGAAGCC ATGGAAAAGG ATTATGAAAA GATCCAGGGC
GAGATCAAGC AGAAGGCGAT GAGCGTCGAC CCGATCGGCT TTTTCGCGCC GGGAATGCTG
AAACCGGTCC GCGACCAGAA GCATGATGAG CCGCGCGACT GA
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| Protein sequence | MAEAVVKEKQ VKLQVANARA EESGGGIARI PRAAMAELGL SEGDVVQISG KRDTASRVVA
PYPEDEGLNV IRLDGLQRAN AGAGAGDMVV LSRVETRPAT RVVFAPAQEN LRLQGSANAL
KRSFFGRPLV AGDTVATAGQ QRVSAGDMPP QLRQMLNAPA YALAEVRLLV VSASPKGVVT
IDENTEVELL PEYQEPHDAR RTDVTYDDLG GLGETIDQLR EMVELPLRYP ELFRRLGVDP
PRGVLLHGPP GTGKTRLARA VANESEAQFF LINGPEIMGS AYGESEKRLR DIFEAAAKAA
PSILFIDEID SIAPKRGQVH GEAEKRLVAQ LLTLMDGLEP RTNLVVIAAT NRPDAIDEAL
RRPGRFDREI VIGVPDEKGR REILGIHTRG MPLGDDVDLD ELARTTFGFV GADMAALTRE
AAIEAVRRIM PRLNLEDGTI PSEVLDELSV LRADFNNALK RVQPSAMREV MVQAPKTRWS
DIGGLDAARD KMIEGIELPL KHPEAFRRLG IRPAKGFLLY GPPGTGKTLL AKAAARESDA
NFIAIKSSDL LSKWYGESEQ QIARLFARAR AVAPTIIFID ELDSLVPARG SGTSGEPQVT
ERVVNTILAE MDGIEEMQSV VVIGATNRPN LIDPALLRPG RLDELIYVSV PDREGRRRIL
EIQTGKMPLA GDVDLALLAE RTARFTGADL EDLSRRAGLA ALKRSIGADT VTMADFEAAL
KDTRASVTEA MEKDYEKIQG EIKQKAMSVD PIGFFAPGML KPVRDQKHDE PRD
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