Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1599 |
Symbol | |
ID | 4082751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1675663 |
End bp | 1677606 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638009968 |
Product | ATP-dependent metalloprotease FtsH |
Protein accession | YP_616645 |
Protein GI | 103487084 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.238697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGACG ACAAGGAACC GCAGGGCAAC CCCTGGATGA AGAGCGTGAT GATCTGGAGC GGCATTCTGC TTGCCATGCT CCTTGTCGCC TCGATGTTCG GCGGCGCCGC ACAGCCCGTC GGCAATCCGC TCGCCTATTC GGAGTTCCGC CAGAAGGTCG AGGAAGGCAG CGTCAAGGAA GTGATCCTGT CGGAGGACCG AGTCACCGGC ACGCTGTCGA ACGGCGACCG TTTTACGGCG AACGTCGTGC GCGACCCCGA CCTGCTCAAG ATGCTGAACG ACAATGGCGT GAAATATGAC GGGCAGCCGG CCGAAACGCC CAATTTCTGG ATGTATATGC TTGTCCAGTC GCTGCCTTTC CTGCTGATCC TCGGCATCGC CTTCTTCGTC TTCCGCCAGG TGCAGAAGAA TAACGGCTCG GGCGCCATGG GCTTTGGCAA GTCGCGCGCG AAAATGCTCA CCGAAAAACA GGGTCGCGTG ACCTTCGACG ATGTCGCAGG CATCGACGAG GCGCGCGAAG AGCTGGAGGA AATCGTCGAG TTCCTGAAAG ATCCCACCAA GTTCTCGAAG CTCGGCGGCC AGATTCCGAA GGGCGCGCTG CTCGTCGGCT CGCCGGGCAC CGGCAAGACT TTGCTCGCGC GCGCGATCGC GGGCGAGGCG GGCGTTCCTT TCTTTACCAT TTCGGGTTCG GACTTCGTCG AAATGTTCGT CGGCGTCGGC GCCAGCCGCG TCCGCGACAT GTTCGAACAG GCGAAGCGCA ACGCACCGTG CATCGTCTTC ATCGACGAAA TCGACGCGGT CGGCCGTCAC CGCGGCGCCG GGCTGGGCAA CGGCAATGAC GAGCGCGAGC AGACGCTGAA CCAGCTCCTC GTCGAAATGG ACGGGTTCGA GGCCAATGAA GGCATCATCA TCGTCGCCGC GACCAACCGC CCCGACGTGC TCGACCCCGC GCTGCTGCGT CCGGGCCGCT TCGACCGCCA GGTCGTCGTC CCGCGCCCCG ACATCGAGGG CCGCCAGAAG ATCCTGGAGG TCCATACGCG CAAGAAGCCG CTCGCGCCCG ACGTCGACCT GCGCCGCATT GCGCGCGGAA CACCGGGCTT TTCGGGCGCC GATCTGGCTA ATCTTTGCAA CGAAGCGGCG CTGCTCGCCG CGCGCAAGGG CAAGCGCCTG ATCGCGTCGG ACGAGTTCGA GGAAGCCAAG GACAAGGTGA TGATGGGCGC CGAGCGCCGA TCGATGGTGA TGACCGAGGA CGAGAAGAAA TCGACCGCCT ATCACGAGGC CGGCCACGCG CTCGTCTCGC TGCACGTCGA GGGCTGCGAC CCGCTCCACA AGGTTACGAT CATCCCGCGC GGCCGCGCGC TGGGCGTGAC GTGGAACCTG CCCGAACGCG ACCGCTATTC GACCAACATG AAACAGATGA AGGCGCGTCT TGCGCTCTGC TTCGGGGGTC GCATCGCCGA ACAGCTCATC TATGGCGAAG ACGAACTCAA TACGGGTGCA TCGAACGATA TCCAGCAGGC GACCGAGATG GCGCGCGCCA TGGTCATGGA ATATGGGATG TCCGAAAAGC TCGGCTGGCT ACGTTACCGC GACAATCAGG ACGAGGTATT CCTTGGCCAC AGTGTCTCGC GCGCGCAGAA TATGTCGGAG GAAACCGCCA AGCTGATCGA CGCCGAAGTG CGCCGCCTTG TCGAAGAAGG CGAAGCGGTC GCGCGCAAGG TGCTTACCGA CCATATCGAC GAGCTTCACC GGTTGGCCGC TGCGCTGCTC GAATATGAAA CGCTGTCGGG CGAGGAAGCG AAGCGGGTGA TCAAGGGCGA GGACATCGGA CGCGAGGACG ACGCCGACAA GCGCGGCACG CCCGTCAGCG GCCATGTCGG CGGCCTGCCG CAGATCAAGC GCAAGCCGCG GCCGTTCGGC GACGCGAACC CGCAGGGCGC CTAG
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Protein sequence | MQDDKEPQGN PWMKSVMIWS GILLAMLLVA SMFGGAAQPV GNPLAYSEFR QKVEEGSVKE VILSEDRVTG TLSNGDRFTA NVVRDPDLLK MLNDNGVKYD GQPAETPNFW MYMLVQSLPF LLILGIAFFV FRQVQKNNGS GAMGFGKSRA KMLTEKQGRV TFDDVAGIDE AREELEEIVE FLKDPTKFSK LGGQIPKGAL LVGSPGTGKT LLARAIAGEA GVPFFTISGS DFVEMFVGVG ASRVRDMFEQ AKRNAPCIVF IDEIDAVGRH RGAGLGNGND EREQTLNQLL VEMDGFEANE GIIIVAATNR PDVLDPALLR PGRFDRQVVV PRPDIEGRQK ILEVHTRKKP LAPDVDLRRI ARGTPGFSGA DLANLCNEAA LLAARKGKRL IASDEFEEAK DKVMMGAERR SMVMTEDEKK STAYHEAGHA LVSLHVEGCD PLHKVTIIPR GRALGVTWNL PERDRYSTNM KQMKARLALC FGGRIAEQLI YGEDELNTGA SNDIQQATEM ARAMVMEYGM SEKLGWLRYR DNQDEVFLGH SVSRAQNMSE ETAKLIDAEV RRLVEEGEAV ARKVLTDHID ELHRLAAALL EYETLSGEEA KRVIKGEDIG REDDADKRGT PVSGHVGGLP QIKRKPRPFG DANPQGA
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