Gene Sala_1599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1599 
Symbol 
ID4082751 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1675663 
End bp1677606 
Gene Length1944 bp 
Protein Length647 aa 
Translation table11 
GC content64% 
IMG OID638009968 
ProductATP-dependent metalloprotease FtsH 
Protein accessionYP_616645 
Protein GI103487084 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0465] ATP-dependent Zn proteases 
TIGRFAM ID[TIGR01241] ATP-dependent metalloprotease FtsH 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.238697 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGACG ACAAGGAACC GCAGGGCAAC CCCTGGATGA AGAGCGTGAT GATCTGGAGC 
GGCATTCTGC TTGCCATGCT CCTTGTCGCC TCGATGTTCG GCGGCGCCGC ACAGCCCGTC
GGCAATCCGC TCGCCTATTC GGAGTTCCGC CAGAAGGTCG AGGAAGGCAG CGTCAAGGAA
GTGATCCTGT CGGAGGACCG AGTCACCGGC ACGCTGTCGA ACGGCGACCG TTTTACGGCG
AACGTCGTGC GCGACCCCGA CCTGCTCAAG ATGCTGAACG ACAATGGCGT GAAATATGAC
GGGCAGCCGG CCGAAACGCC CAATTTCTGG ATGTATATGC TTGTCCAGTC GCTGCCTTTC
CTGCTGATCC TCGGCATCGC CTTCTTCGTC TTCCGCCAGG TGCAGAAGAA TAACGGCTCG
GGCGCCATGG GCTTTGGCAA GTCGCGCGCG AAAATGCTCA CCGAAAAACA GGGTCGCGTG
ACCTTCGACG ATGTCGCAGG CATCGACGAG GCGCGCGAAG AGCTGGAGGA AATCGTCGAG
TTCCTGAAAG ATCCCACCAA GTTCTCGAAG CTCGGCGGCC AGATTCCGAA GGGCGCGCTG
CTCGTCGGCT CGCCGGGCAC CGGCAAGACT TTGCTCGCGC GCGCGATCGC GGGCGAGGCG
GGCGTTCCTT TCTTTACCAT TTCGGGTTCG GACTTCGTCG AAATGTTCGT CGGCGTCGGC
GCCAGCCGCG TCCGCGACAT GTTCGAACAG GCGAAGCGCA ACGCACCGTG CATCGTCTTC
ATCGACGAAA TCGACGCGGT CGGCCGTCAC CGCGGCGCCG GGCTGGGCAA CGGCAATGAC
GAGCGCGAGC AGACGCTGAA CCAGCTCCTC GTCGAAATGG ACGGGTTCGA GGCCAATGAA
GGCATCATCA TCGTCGCCGC GACCAACCGC CCCGACGTGC TCGACCCCGC GCTGCTGCGT
CCGGGCCGCT TCGACCGCCA GGTCGTCGTC CCGCGCCCCG ACATCGAGGG CCGCCAGAAG
ATCCTGGAGG TCCATACGCG CAAGAAGCCG CTCGCGCCCG ACGTCGACCT GCGCCGCATT
GCGCGCGGAA CACCGGGCTT TTCGGGCGCC GATCTGGCTA ATCTTTGCAA CGAAGCGGCG
CTGCTCGCCG CGCGCAAGGG CAAGCGCCTG ATCGCGTCGG ACGAGTTCGA GGAAGCCAAG
GACAAGGTGA TGATGGGCGC CGAGCGCCGA TCGATGGTGA TGACCGAGGA CGAGAAGAAA
TCGACCGCCT ATCACGAGGC CGGCCACGCG CTCGTCTCGC TGCACGTCGA GGGCTGCGAC
CCGCTCCACA AGGTTACGAT CATCCCGCGC GGCCGCGCGC TGGGCGTGAC GTGGAACCTG
CCCGAACGCG ACCGCTATTC GACCAACATG AAACAGATGA AGGCGCGTCT TGCGCTCTGC
TTCGGGGGTC GCATCGCCGA ACAGCTCATC TATGGCGAAG ACGAACTCAA TACGGGTGCA
TCGAACGATA TCCAGCAGGC GACCGAGATG GCGCGCGCCA TGGTCATGGA ATATGGGATG
TCCGAAAAGC TCGGCTGGCT ACGTTACCGC GACAATCAGG ACGAGGTATT CCTTGGCCAC
AGTGTCTCGC GCGCGCAGAA TATGTCGGAG GAAACCGCCA AGCTGATCGA CGCCGAAGTG
CGCCGCCTTG TCGAAGAAGG CGAAGCGGTC GCGCGCAAGG TGCTTACCGA CCATATCGAC
GAGCTTCACC GGTTGGCCGC TGCGCTGCTC GAATATGAAA CGCTGTCGGG CGAGGAAGCG
AAGCGGGTGA TCAAGGGCGA GGACATCGGA CGCGAGGACG ACGCCGACAA GCGCGGCACG
CCCGTCAGCG GCCATGTCGG CGGCCTGCCG CAGATCAAGC GCAAGCCGCG GCCGTTCGGC
GACGCGAACC CGCAGGGCGC CTAG
 
Protein sequence
MQDDKEPQGN PWMKSVMIWS GILLAMLLVA SMFGGAAQPV GNPLAYSEFR QKVEEGSVKE 
VILSEDRVTG TLSNGDRFTA NVVRDPDLLK MLNDNGVKYD GQPAETPNFW MYMLVQSLPF
LLILGIAFFV FRQVQKNNGS GAMGFGKSRA KMLTEKQGRV TFDDVAGIDE AREELEEIVE
FLKDPTKFSK LGGQIPKGAL LVGSPGTGKT LLARAIAGEA GVPFFTISGS DFVEMFVGVG
ASRVRDMFEQ AKRNAPCIVF IDEIDAVGRH RGAGLGNGND EREQTLNQLL VEMDGFEANE
GIIIVAATNR PDVLDPALLR PGRFDRQVVV PRPDIEGRQK ILEVHTRKKP LAPDVDLRRI
ARGTPGFSGA DLANLCNEAA LLAARKGKRL IASDEFEEAK DKVMMGAERR SMVMTEDEKK
STAYHEAGHA LVSLHVEGCD PLHKVTIIPR GRALGVTWNL PERDRYSTNM KQMKARLALC
FGGRIAEQLI YGEDELNTGA SNDIQQATEM ARAMVMEYGM SEKLGWLRYR DNQDEVFLGH
SVSRAQNMSE ETAKLIDAEV RRLVEEGEAV ARKVLTDHID ELHRLAAALL EYETLSGEEA
KRVIKGEDIG REDDADKRGT PVSGHVGGLP QIKRKPRPFG DANPQGA