| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1569 |
|---|
| Symbol | |
|---|
| ID | 4082683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1640935 |
|---|
| End bp | 1642302 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638009938 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_616615 |
|---|
| Protein GI | 103487054 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3562] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTG TTCCGATCAT CACGACCCTT GCAGAATATC AGACACGATT CTGGGCGCTC
GTCGGGGAGG ATTTGCGCGC GCGCGGCTTT GCGCCACATT TCGTGTCGTT CGACGACCGC
TCGTGCGACA TGCTGAACAG CCGGGGTTTC GCAGTCACCG CCGCCAATGA TGTCGCGCGG
CCGCCGGCGA GTGAGCTCGA AGCGGTGCTT GACCGTGCGG GCGTGACGAA CCTCGCCTAC
TGGACGTCGC ACGAACGCTT CGCGTTCGTG CGGTCGGATG ATGAGGCGAT GAGGGCGAAA
CTCGCGCGCA GCATCGTCGC GGCACAATCG GCCATTGCCG ACGCGCAGCG AAACGGCCAG
CCGGTCATGG TCCAGGAGGT CGGCGGCTTC CTGTCGGTCA TCGGATCGTG GTTTGCGGCG
CGTAGCGCCG GAATCCGCCA CTTTTTCATC GAACCCAGCT TTTTTCGCGG TCGGCTGCTG
TTCCGAGAAG GCGATTTTGC CGCCCCCGTG ATACCGGCGG ACGCACGCGC CGATCATGGG
GCTGACTTTT CGGCATATCT GCAAAAAACG CTGGCCGACG GGCAGATCGT CATCCCGAAA
AAGGATGCCC ACCATTATAA TGCAGCGTGG AAAAAGGTGC TCAATCTCAG GAATGCGCGG
CGCTTTGCCG AAAAGGCCTA TGACAAGTAT ATTCTCGGCA AGCGGCAGGA GTTCGGCTTC
ATCGGGCAGC ACGCCGCAAC GCATGTGAAG GCGCTCGTGA ACTCGCGTAA GCTTGCAGGC
CATTATACGC CGCTCGATGA TATCGATGAT TTCCTGTATT TTCCGCTGCA TGTGCCGGGC
GATATTGCGC TGACGCTCCG GTCGCCCGAA TATCTGGATC AGCTGGCGCT CGTCGACTAT
ATCTGCCGTC ACCTTCCCGA CGGAGTGCGG CTGGCGATCA AGGAGCATCC CGCGATGGTC
GGCATGATGC AGCCGGACCG GCTCAAGGCC ATGCTCCGGC GCTACCCGCG CCTGGCGCTG
ATCGACCCCG GCACCAACAA TTATGCGGTC ATGCGGCGGG CGAAGGGGGT TGTGACGATC
AATAGCAAGA CGGGCGCGGA AGCGGGCCTC ATCGGTTTGC CCGTCATCGT GCTCGGCGAT
GCATTCTATC GCGAGGCCCC TTTCGCCCAC GCCCTCGACA ATCTGGTCGA CCTGCCCGCG
GCGATGCAAA AGCTGGTTGA TGGCGAAGCC AGCTGTTCTG CCGGCCCGGC CCGGCTCGAC
TGGTTCGCGG GTGCCTGGGA ACTCAGCCGA CCTGGCGAGC TTTATGTGAC GGGCGCCGAT
GAGGTGCGGA CCTTCACCGA CACGCTGACG TCATATCTGC GCGCCTGA
|
|---|
| Protein sequence | MTIVPIITTL AEYQTRFWAL VGEDLRARGF APHFVSFDDR SCDMLNSRGF AVTAANDVAR
PPASELEAVL DRAGVTNLAY WTSHERFAFV RSDDEAMRAK LARSIVAAQS AIADAQRNGQ
PVMVQEVGGF LSVIGSWFAA RSAGIRHFFI EPSFFRGRLL FREGDFAAPV IPADARADHG
ADFSAYLQKT LADGQIVIPK KDAHHYNAAW KKVLNLRNAR RFAEKAYDKY ILGKRQEFGF
IGQHAATHVK ALVNSRKLAG HYTPLDDIDD FLYFPLHVPG DIALTLRSPE YLDQLALVDY
ICRHLPDGVR LAIKEHPAMV GMMQPDRLKA MLRRYPRLAL IDPGTNNYAV MRRAKGVVTI
NSKTGAEAGL IGLPVIVLGD AFYREAPFAH ALDNLVDLPA AMQKLVDGEA SCSAGPARLD
WFAGAWELSR PGELYVTGAD EVRTFTDTLT SYLRA
|
|---|
| |