Gene Sala_1538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1538 
Symbol 
ID4082437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1606042 
End bp1606503 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content60% 
IMG OID638009906 
ProductMerR family transcriptional regulator 
Protein accessionYP_616584 
Protein GI103487023 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.129222 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACGTTCA CGTCAACGGA AACTAGTTTC GTCGGCATGA CCGAACCCTA CGGCCACTCG 
CATATCGATA CGCCCGACCA TCTGGGGCGC GAACAGTTCA GCATCACCGA CTTGTCGACC
GAGTTCGGCG TCACCGCCCG TGCGCTGCGC TTCTATGAGG ATGAGGGGCT GATCAGTCCG
TCGCGCAAGG GATTGTCGCG AATCTATTCG AAGCGCGACC GCGCGCGGCT CGCGTGGATT
CTGCGCGCGA AGCGCACCGG CTTCAGCCTC GCCGATATCC GCGAGATGAT CGACCTGTAT
GATGTCGGCG ACGGCCGCAA GCTGCAACGG CAGGTGACGA TCGAGAAATG CGAGGAACGC
ATCGCGTTGC TCCGCCGCCA GCGCGACGAT ATTGACAGCG CTGTAGATGA ACTGTCACGT
TTCATCGAAA TGGTGAAAAA GGTCGACGCC GGCAAGAAAT AG
 
Protein sequence
MTFTSTETSF VGMTEPYGHS HIDTPDHLGR EQFSITDLST EFGVTARALR FYEDEGLISP 
SRKGLSRIYS KRDRARLAWI LRAKRTGFSL ADIREMIDLY DVGDGRKLQR QVTIEKCEER
IALLRRQRDD IDSAVDELSR FIEMVKKVDA GKK