| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1502 |
|---|
| Symbol | |
|---|
| ID | 4081180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1565391 |
|---|
| End bp | 1565924 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638009869 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_616548 |
|---|
| Protein GI | 103486987 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4567] Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.233016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.368331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA CGCGCCAATT GCTCATTGTC GAGGATGACG AGGCGTTCGC GCGGACGCTG
AAACGCTCGT TCGAGCGGCG CGGCTATGAG GTGTTCGTGG CGGGCAGCTT CGAGGCGATG
GACGCGGTGC TGAAGACGGT GCGGCCGGGC TATGCCGTCG TCGACCTGAA GCTCGGCAGC
GCGTCGGGGC TCGCCTGCGT GCAGGCGCTG CGCGCGGCCG ACCCGGTGAT GCGGATCGTC
GTGCTGACGG GCTTTGCGAG CATCGCCACC GCGGTCGAGG CGATCAAGCT CGGCGCCTCC
TATTATCTCG CCAAGCCGTC GAACACCGAC GACATCGAGG CGGCGTTCGA GCGCGCCGAG
GGCAACCCCG ACGCCGCGCT CGACGCGCGC CCCTCGTCGA TCAAGACCGT CGAGTGGGAG
CATATCCATC AGACGCTGGT CGAAACCGGC TTCAACATCT CCGAAACCGC GCGTCGGCTG
GGGATGCACC GGCGCACACT CGCGCGCAAG CTGGAGAAAC GGCAGGTCCG CTGA
|
|---|
| Protein sequence | MSETRQLLIV EDDEAFARTL KRSFERRGYE VFVAGSFEAM DAVLKTVRPG YAVVDLKLGS
ASGLACVQAL RAADPVMRIV VLTGFASIAT AVEAIKLGAS YYLAKPSNTD DIEAAFERAE
GNPDAALDAR PSSIKTVEWE HIHQTLVETG FNISETARRL GMHRRTLARK LEKRQVR
|
|---|
| |