| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1495 |
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| Symbol | rpsA |
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| ID | 4081172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1557849 |
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| End bp | 1559561 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638009861 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_616541 |
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| Protein GI | 103486980 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.255625 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTCTA CGGCTTTTCC GACGCGCGAC GATTTCGCCG CGATGCTCGA CGAATCGCTG
GGCGGCGCCG ACGGCGGCTT TGAAGGCCGT GTCGTCAAGG GCACCGTGAC CGCGATTGAA
AATGACCTGG CAGTGATCGA CATTGGCCTG AAGAGCGAAG GGCGCGTGCC GCTTCGCGAA
TTCGCGATGC CGGGCCAGAA GGCTGACCTC AAGGTCGGCG ACGAAGTCGA AGTTTATGTC
GACCGCGTCG AAAACGCCAA TGGCGAGACC ATGTTGTCGC GCGACCGCGC TCGCCGCGAA
GCCGCGTGGG ACCGCCTTGA GGAAGAGTTC AACAAGGAAG CGCGCGTCGA AGGCGTCATC
TTCGGCCGCG TCAAGGGCGG CTTCACCGTC GACCTCGGCG GCGCCGTGGC CTTCCTGCCG
GGCAGCCAGG TCGACATCCG CCCTGTTCGT GACGTCGGCC CGCTCATGGA CCTGCCGCAG
CCCTTCCAGA TCCTCAAGAT GGATCGCCGC CGCGGCAACA TCGTCGTCTC GCGCCGCGCG
ATCCTCGAAG AAACGCGCGC CGAACAGCGT TCGGGCCTGA TCCAGAACCT CGAAGAAGGC
CAGATCATCG AAGGCGCGGT CAAGAATATC ACCGACTATG GCGCCTTTGT CGACCTTGGC
GGCATCGACG GCCTGCTTCA TGTCACCGAC ATGAGCTACA AGCGCGTCAA CCACCCGAGC
GAAATCATCA ATATCGGCGA TACGGTCAAG GTGCAGATCA TCCGCATCAA CCGTGACACA
CAGCGTATCA GCCTGGGCAT GAAGCAGCTT GAAAGCGATC CGTGGGAAGG CGTCGCCGCC
AAATATCCCG TCGGCGCGAA GCTGTCGGGC ACCGTCACCA ACATTACCGA TTACGGCGCG
TTCGTCGAAC TCGAACCCGG CATCGAGGGC CTCGTCCACG TCAGCGAAAT GTCGTGGGTC
AAGAAGAATG TCCATCCCGG CAAGATCGTT TCGACGAGCC AGGAAGTCGA GGTCATCGTG
CTCGAAGTCG ACAGCGACAA GCGTCGCATC AGCCTCGGGC TCAAACAGGC GCAGTCGAAC
CCCTGGGGCG CCTTCGCCGA GGCGCACCCG GTCGGCTCGA TCGTCGAAGG CGAAGTCAAG
AATGCGACCG AATTCGGTCT GTTCATCGGT CTTCCGGGCG ACGTTGACGG CATGGTCCAC
ATGTCGGACA TCGCGTGGGG CATCTCGGGC GAGGAGGCGC TGCACCTCCA CCGCAAGGGC
GAGACGGTGC AGGTCGTCGT CCTCGACGTC GATGTCGAGA AGGAACGCAT CAGTCTCGGT
ATCAAGCAGC TCGAAAAGGG TGCGCCCGCC GTCGGCGGCG GCATGGCCGC TGCGGGTTCG
CTGAAGAAGA ACGATGTTGT CACCGTCTCG GTCCTCGAAG TGCGTGACAA CGGCCTTGAA
GTACAGGCCG GCGAAAGCGG CGTCACGGGC TTTATCAAGC GCGCCGATCT TGGCCGCGAC
CGCGACGAAC AGCGTCCCGA GCGTTATCAG GTCGGTCAGA AGTTCGACGC GATGGTTGTC
GGCTTCGATC GCTCGAAAAA GCCGAACTTC TCGGTCAAGG CGATGCAGAT CGCCGAAGAG
AAGGAAGCGG TTGCGCAATA TGGTTCGTCG GATTCGGGTG CGTCGCTCGG CGACATCCTC
GGCGAAGCGC TAAAGGCGGG CAAGAAGGAC TGA
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| Protein sequence | MASTAFPTRD DFAAMLDESL GGADGGFEGR VVKGTVTAIE NDLAVIDIGL KSEGRVPLRE
FAMPGQKADL KVGDEVEVYV DRVENANGET MLSRDRARRE AAWDRLEEEF NKEARVEGVI
FGRVKGGFTV DLGGAVAFLP GSQVDIRPVR DVGPLMDLPQ PFQILKMDRR RGNIVVSRRA
ILEETRAEQR SGLIQNLEEG QIIEGAVKNI TDYGAFVDLG GIDGLLHVTD MSYKRVNHPS
EIINIGDTVK VQIIRINRDT QRISLGMKQL ESDPWEGVAA KYPVGAKLSG TVTNITDYGA
FVELEPGIEG LVHVSEMSWV KKNVHPGKIV STSQEVEVIV LEVDSDKRRI SLGLKQAQSN
PWGAFAEAHP VGSIVEGEVK NATEFGLFIG LPGDVDGMVH MSDIAWGISG EEALHLHRKG
ETVQVVVLDV DVEKERISLG IKQLEKGAPA VGGGMAAAGS LKKNDVVTVS VLEVRDNGLE
VQAGESGVTG FIKRADLGRD RDEQRPERYQ VGQKFDAMVV GFDRSKKPNF SVKAMQIAEE
KEAVAQYGSS DSGASLGDIL GEALKAGKKD
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