| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1491 |
|---|
| Symbol | |
|---|
| ID | 4081263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1554464 |
|---|
| End bp | 1554907 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638009856 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_616537 |
|---|
| Protein GI | 103486976 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.234082 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTCGC AGAAGACCCG CTATACGATC CGCGCGTTCC AGCATCTTGC CGACCATTGG
GGCAGGGGGC AGGTCCAGCT TGCGGACATC GCCGAGGCGC AGAATATCCC GCCCAAGTTC
CTGACCGTCA TCCTGTCCGA AATGGCGCGC GAGGGGCTGT TGATTTCGCA GCGCGGCCGC
GACGGAGGTT ATCAGCTTGC GCTGCCTCCC GTCGACATCA GCTATGGCGA CCTCGTCCGC
CTGACGCGCG GGTCGCTGGC GCTCGTCCCC TGCGCCGCAC GCAACGCGCA CGAACATTGC
AAGAATTGCC TGCCCGAAGC CGAATGCCGA CTCCGCAGCC TGATGTTGAA GGTGCGCGAC
GAGACCGCAT CGATCCTCGA CCGCATCACG CTGGCCGACC CGATCGAACT CGAACCCGTT
TTCGAGACCG AAGCAGCGGC CTGA
|
|---|
| Protein sequence | MLSQKTRYTI RAFQHLADHW GRGQVQLADI AEAQNIPPKF LTVILSEMAR EGLLISQRGR
DGGYQLALPP VDISYGDLVR LTRGSLALVP CAARNAHEHC KNCLPEAECR LRSLMLKVRD
ETASILDRIT LADPIELEPV FETEAAA
|
|---|
| |