| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1488 |
|---|
| Symbol | |
|---|
| ID | 4081260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1552390 |
|---|
| End bp | 1552992 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638009853 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_616534 |
|---|
| Protein GI | 103486973 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4341] Predicted HD phosphohydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.395351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0680353 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATA TCACGCGTGA CCATGCGCGT TTCCGCTCGA TGATCGACGG GACGCAGGAA
GACTGGGACA TCATCGCGCG CGAGCAGAAA GCCTTTGCGC CGCAGAATGG CAGACGCATT
CTCGACCATC TGAAGCTGCT CGGCGGCGAT TATGGCGGCT TTCCGGTGGA CCGGCTGGAA
CATTGTCTGC AAACCGCGAC GCGCGCGCAT CGGGACGGCC GCGACGAGGA ATATGTCGTG
ATGGCGCTGC TCCACGATAT CGGCGACACG CTGGGCGCGT TCAATCACCC CGACGTCGCG
GCGGCGATCC TGAAGCCCTT TCTGACCGAG GAAAATCTGT GGATCGTCCA GCACCACGGC
ATCTTCCAGG GCCATTATTT CTTCCACTAT CTCGGGCTCG ACCGCGACAT GCGCGACCAG
TTCAAGGATA GCCCTTATTA CGATGCGTGC GCCGAGTTCT GCGAGAAATA TGACGCGCCG
GCGTTCGACC CCGATTACGA CAGCGAGCCG CTCGAGTTCT TCGAGCCGAT GGTGATGCGG
ATCTGCTCCT ATCCGAAAAG CAGCATCTAC AAGAAGGTGA TGACCGCGGA AGCGGCGGAG
TAG
|
|---|
| Protein sequence | MTDITRDHAR FRSMIDGTQE DWDIIAREQK AFAPQNGRRI LDHLKLLGGD YGGFPVDRLE
HCLQTATRAH RDGRDEEYVV MALLHDIGDT LGAFNHPDVA AAILKPFLTE ENLWIVQHHG
IFQGHYFFHY LGLDRDMRDQ FKDSPYYDAC AEFCEKYDAP AFDPDYDSEP LEFFEPMVMR
ICSYPKSSIY KKVMTAEAAE
|
|---|
| |