| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1486 |
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| Symbol | rpoB |
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| ID | 4081258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1546979 |
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| End bp | 1551157 |
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| Gene Length | 4179 bp |
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| Protein Length | 1392 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638009851 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_616532 |
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| Protein GI | 103486971 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.792933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.131501 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACCA AGGCGAAGTC GGTGGGCCAG GCCCTCGAAG CAACCGCGAC CAAGCGAATC
CGCAAGCTGT TCGGCAATAT CCACGAAGCG GTGGAAATGC CCAACCTGAT TGAGGTGCAG
CGCGAATCCT ATGAGCAGTT CCTGCGCTCG GACCCCTCGA TCGGTTATGT TTCGGGTCTT
GAAAAGACGC TGCGCAGCGT TTTTCCGATC CGCGATTTCG CCGGCACCGC CGAGCTCGAC
TTCGTTCATT ACGAACTTGA AGCGCCCAAA TATGACGTCG AGGAATGCCG TCAGCGCGGC
ATCACCTATG CGGCGCCGAT GAAGGTAACG CTGCGCCTGA TCGTCTTTGA AGTCGACAGC
GAAACCGACA CGCGCAGCGT CCTCGATATC AAGGAACAGG ACGTTTACAT GGGCGACATG
CCGCTCATGA CCGAGAACGG CACCTTCTTC GTCAACGGCA CCGAGCGCGT CATCGTGTCG
CAGATGCACC GTTCGCCGGG TGTGCTCTTC GACCATGACC GCGGCAAGAC CCATTCGTCG
GGCAAGTTCC TTTTCGCCGC GCGCGTGATC CCGTACCGCG GTTCGTGGCT CGATTTCGAG
TTCGACGCCA AGGACATTGT CAATGTCCGT ATCGACCGCA AGCGCAAGCT GCCGGTCACC
AGCCTGCTCT ATGCGCTGGG CATGACGGGC GAGGAGATTC TCAACCATTT CTATGACCGC
CTCGTCTTCG AGCGCGCCGA GAATGGCTGG AAAGTACCGT TCATGGTCGA AAACTGGCGC
GGTTCGAAGC CCGCGTTCGA CGTCGTGGAC GCCAAGACCG GCGAAGTCGT CTTTGCCGCC
GGGCACAAGA TCAGCCCGCG CCTTGCCAAC AAGGCGGCGA AGGACGGTCT CGACACGCTG
CTGATCCCGA CCGAGGAAAT CTTCGGCCGC TATTCGGCTT ACGACCTCAT CAACGAATCG
ACCGGCGAGA TTTACATCGA GGCCGGCGAC GAAGTGTCGG CCGAGAATCT GGAGAAGCTC
GACGCCGCGG GTATCGACAA GCTGGTTCTG CTCGACATCG ACCACAACAA CACCGGCCCG
TGGATTCGCA ACACGCTGAA GGCCGACAAG GCCGAGGATC GCGACCAGGC GCTGTCGGAC
ATCTACCGCG TCATGCGCCC TGGTGAACCG CCGACGCGCG AAACCGCGGA AGCGCTGTTC
GCAGGCCTGT TCTTCGACCC CGAGCGTTAC GATCTGTCGG CTGTCGGCCG CGTCAAGCTC
AACATGCGCC TGGGCCTCGA TGCCGAGGAC ACGGTCACCA CGCTGCGCAG CGAGGACATT
CTCGCCGTGG TCAAGGAGCT GGTGAACCTG AAAGACGGCA AGGGCGAAAT CGACGACATC
GACAATCTGG GCAACCGCCG CGTCCGTTCG GTCGGCGAGC TGCTCGAAAA CCAGTATCGC
GTCGGCCTGC TGCGCATGGA GCGCGCGGTC AAGGAGCGCA TGAGCTCGGT CGACGTGTCG
ACGGTGATGC CGAATGACCT GATCAACGCG AAGCCCGCGG TCGCCGCGGT GCGCGAATTC
TTCGGCTCGT CGCAGCTTTC GCAGTTCATG GACCAGACCA ATCCCTTGTC GGAAGTCACC
CACAAGCGCC GCGTGTCGGC GCTTGGGCCG GGTGGTCTGA CGCGTGAGCG TGCGGGCTTT
GAAGTCCGCG ACGTTCATCC GACCCACTAT GGCCGCATCT GCCCGATTGA AACGCCCGAA
GGCCCGAACA TCGGTCTGAT CAACAGCCTC GCGACCTTTG CGCGCGTCAA CAAATATGGC
TTCATCGAAA CGCCATACCG CCGCGTCGTC GACGGCAAGG TGACGAACGA GGTCGTTTAC
CTCTCGGCGA TGGAGGAATC GAAGCACACG GTTGCGCAGG CGAACGCTGA TCTGAATCCC
GACGGCAGCT TCATCGACGA ACTGATTTCC GCGCGCGAAG CAGGCGAGTT CCTGATGGCG
CCGCGCGAGC AGATCACGCT GATGGACGTG TCGCCGAAGC AGCTCGTTTC GGTTGCCGCG
TCGCTGATTC CGTTCCTCGA AAACGATGAC GCCAACCGCG CGCTGATGGG GTCGAACATG
CAGCGTCAGG CGGTGCCTTT GCTCCGCGCC GAGGCGCCGG TCGTCGGCAC GGGCATGGAA
GAAACCGTTG CCCGCGACTC GGGCGCCGCG ATCGCGGCGC GCCGCGGCGG CGTGATCGAC
CAGGTCGACG CGACGCGTAT CGTGATCCGT GCGACCGACA TGGTCGAACC CGGCAAGTCG
GGCGTCGACA TCTATCGCCT GCAGAAGTTC CAGCGGTCGA ACCAGAACAC CTGCATCAAC
CAGCGTCCGC TGGTGAAGGT GGGCGACGTG GTCCGCGCCG GCGATATCAT CGCCGACGGC
CCGTCGACCG AGCTTGGCGA ACTGGCGCTC GGCAAGAATG TGCTCGTCGC CTTCATGCCG
TGGAACGGCT ACAATTATGA GGACTCGATC CTCATTTCCG AACGCATCGT GAAGGACGAC
GTCTTCACCT CGATCCACAT CGAGGAGTTT GAGGTCACCG CGCGCGACAC GCGCCTTGGC
CCCGAAGACA TCACGCGCGA CATTCCGAAC GTCGGCGAGG AAGCGCTGCG CAACCTCGAC
GAAGCGGGCA TCGTCTATAT CGGCGCCGAG GTCGGCCCCG GCGACATCCT GGCCGGCAAG
ATCACCCCGA AGGGTGAATC GCCGATGACG CCGGAAGAAA AGCTGCTGCG CGCGATTTTC
GGCGAAAAGG CCAGCGACGT GCGCGACACC TCGCTCCGCC TGCCGCCCGG CGTGTCGGGC
ACGGTCGTCG AAGTCCGCGT CTTCAACCGT CACGGCATCG ACAAGGACGA GCGCGCGATC
GCGATCGAAC GCGAGGAAAT CGAGCGCCTG AAGCAGGACG CCGACGACGA GCGCGCGATC
CTCAACCGCG CGACCTTCTC CAGCCTCAAG GACCTGCTGG TCGGTCAGGC GACCAGCGCC
GTGCCGAAGG GGTTGAAAAA GGGTGACATC GTCACCGAAG AGATGCTGGT CGGACTCGAC
CGTGCCGACT GGTGGAAGCT CGCGGTGGTC GACGACAAGG CGCAGACCGC GCTGGAAGCG
ATCAAGGCGC AGTATGACGA TGCGATCAAG CGGATCAACG CGAAATATGA AGATCGCGTC
GAAAAGCTGC AGCGCGGCGA CGAACTCGCC CCCGGCGTGC TCAAGATGGT CAAGGTCTTC
GTCGCGGTGA AGCGCAAGCT GCAACCGGGC GACAAGATGG CCGGTCGTCA CGGCAACAAG
GGCGTCATCA GCCGCATCCT GCCCGTCGAG GACATGCCGT TCCTCGAGGA CGGCACGCCG
GTCGATATCG TGCTGAATCC GCTGGGCGTG CCGTCGCGCA TGAATGTCGG ACAGATCCTC
GAAACACATC TTGGCTGGGC GTCGCGCGGG CTGGGGCAAC AGGTCACGAG GGCGCTGGAG
GAATGGCGCG ACGCCAATCC CGATGCGACG GGTGGCGAAA TGCCCGAGGC GGTGCGCGAA
AAGCTGGAGC ATGTTTATGG CGCTGAATAT GTCGAAGACA TCCGTTCGCG CGATGCCGAA
GGCATTATCG AGCTGGCGTC GAACCTGAAG GTCGGCGTGC CCTTCGCGAC GCCGGTGTTC
GACGGCGCGA AGGAAGCCGA TGTGTCGAAC ATGCTGACGC TGGCGGGACT TGATGAATCG
GGTCAGTCGG ACCTGTATGA CGGCCGCACC GGCGACAAGT TCGACCGCAA GGTGACCGTG
GGCTACATCT ATATGCTGAA GCTCCATCAC CTTGTCGACG ACAAGATCCA CGCGCGTTCG
ATCGGGCCGT ACAGCCTCGT CACCCAGCAG CCGCTGGGCG GTAAGGCGCA GTTCGGCGGC
CAGCGCTTCG GTGAAATGGA AGTGTGGGCG CTGCAAGCCT ATGGCGCGGC ATACACGCTC
CAGGAAATGC TGACGGTGAA GTCCGACGAC GTGATCGGCC GCACCAAGGT TTACGAAGCG
ATCGTCAAGG GCGACGATAC GTTCGAGGCC GGCATTCCCG AAAGCTTCAA CGTGCTCGTC
AAGGAAATGC GCTCGCTGGG CCTCAACGTC GAACTGTCTT CCTATGCGGA AGAAGATCCC
GACGAAGGTC CCGAAGCCCT TCCCGAAGCC GCCGAATAA
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| Protein sequence | MATKAKSVGQ ALEATATKRI RKLFGNIHEA VEMPNLIEVQ RESYEQFLRS DPSIGYVSGL
EKTLRSVFPI RDFAGTAELD FVHYELEAPK YDVEECRQRG ITYAAPMKVT LRLIVFEVDS
ETDTRSVLDI KEQDVYMGDM PLMTENGTFF VNGTERVIVS QMHRSPGVLF DHDRGKTHSS
GKFLFAARVI PYRGSWLDFE FDAKDIVNVR IDRKRKLPVT SLLYALGMTG EEILNHFYDR
LVFERAENGW KVPFMVENWR GSKPAFDVVD AKTGEVVFAA GHKISPRLAN KAAKDGLDTL
LIPTEEIFGR YSAYDLINES TGEIYIEAGD EVSAENLEKL DAAGIDKLVL LDIDHNNTGP
WIRNTLKADK AEDRDQALSD IYRVMRPGEP PTRETAEALF AGLFFDPERY DLSAVGRVKL
NMRLGLDAED TVTTLRSEDI LAVVKELVNL KDGKGEIDDI DNLGNRRVRS VGELLENQYR
VGLLRMERAV KERMSSVDVS TVMPNDLINA KPAVAAVREF FGSSQLSQFM DQTNPLSEVT
HKRRVSALGP GGLTRERAGF EVRDVHPTHY GRICPIETPE GPNIGLINSL ATFARVNKYG
FIETPYRRVV DGKVTNEVVY LSAMEESKHT VAQANADLNP DGSFIDELIS AREAGEFLMA
PREQITLMDV SPKQLVSVAA SLIPFLENDD ANRALMGSNM QRQAVPLLRA EAPVVGTGME
ETVARDSGAA IAARRGGVID QVDATRIVIR ATDMVEPGKS GVDIYRLQKF QRSNQNTCIN
QRPLVKVGDV VRAGDIIADG PSTELGELAL GKNVLVAFMP WNGYNYEDSI LISERIVKDD
VFTSIHIEEF EVTARDTRLG PEDITRDIPN VGEEALRNLD EAGIVYIGAE VGPGDILAGK
ITPKGESPMT PEEKLLRAIF GEKASDVRDT SLRLPPGVSG TVVEVRVFNR HGIDKDERAI
AIEREEIERL KQDADDERAI LNRATFSSLK DLLVGQATSA VPKGLKKGDI VTEEMLVGLD
RADWWKLAVV DDKAQTALEA IKAQYDDAIK RINAKYEDRV EKLQRGDELA PGVLKMVKVF
VAVKRKLQPG DKMAGRHGNK GVISRILPVE DMPFLEDGTP VDIVLNPLGV PSRMNVGQIL
ETHLGWASRG LGQQVTRALE EWRDANPDAT GGEMPEAVRE KLEHVYGAEY VEDIRSRDAE
GIIELASNLK VGVPFATPVF DGAKEADVSN MLTLAGLDES GQSDLYDGRT GDKFDRKVTV
GYIYMLKLHH LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LQAYGAAYTL
QEMLTVKSDD VIGRTKVYEA IVKGDDTFEA GIPESFNVLV KEMRSLGLNV ELSSYAEEDP
DEGPEALPEA AE
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