| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1485 |
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| Symbol | |
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| ID | 4081257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1542641 |
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| End bp | 1546924 |
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| Gene Length | 4284 bp |
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| Protein Length | 1427 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638009850 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_616531 |
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| Protein GI | 103486970 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.614048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.379046 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGC TTACCAACTT CATGAACCCG GTCGCGAAGC CCGAAACCTT CGACATGATC
AAGATCGGCA TCGCGAGCCC CGAGCGCATC CGCTCGTGGT CGTTTGGCGA GATCAAGAAG
CCCGAAACGA TCAACTACCG CACGTTCAAG CCTGAACGTG ACGGGCTGTT CTGCGCGCGC
ATTTTCGGTC CGATCAAGGA TTATGAATGC CTGTGCGGCA AGTACAAGCG TATGAAATAC
AAGGGCATCG TCTGCGAAAA ATGCGGTGTC GAAGTCACGG TCACGAAAGT GCGCCGCGAG
CGCATGGGCC ATATCGAGCT TGCCGCACCC GTCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGCA TCGGCCTGCT GCTCGACATG CAGCTCAAGC AGCTCGAGCG CGTCCTCTAT
TTCGAAGCCT ATATCGTCCT TGAGCCCGGC CTGACCCCGC TCGAGAAGTT CCAGCTGCTG
ACCGAAGACG AACTGCTCGA CGCGCAGGAC GAGTATGGCG AAGATGCTTT TTCGGCCGGT
ATCGGCGCCG AGGCGATCCG CACTCTGCTC GAAAATCTCG ACCTCGAGCA GGAACGCACC
GACCTGATGG AAGAGCTGGC GACGACCAAG TCGGAGCTCA AGCCCAAGAA GATCATCAAG
CGCCTGAAAG TCGTGGAATC CTTCATCGAA TCGGGCAACC GCCCCGAATG GATGATCCTG
GAGGTCGTTC CGGTCATCCC GCCCGAACTG CGCCCGCTGG TGCCGCTCGA CGGCGGCCGC
TTCGCGACGT CGGACCTCAA CGACCTCTAT CGCCGCGTCA TCAACCGCAA CAACCGTCTG
AAGCGCCTGA TGGAACTGCG TGCGCCGGAC ATCATCGTCC GCAACGAGAA GCGCATGTTG
CAGGAAGCCG TCGACGCGCT GTTCGACAAC GGCCGCCGCG GTCGCACGAT CACCGGCGCC
AACAAGCGTC CGCTGAAGTC GCTGTCCGAC ATGCTCAAGG GCAAGCAGGG CCGCTTCCGC
CAGAACCTGC TCGGCAAGCG CGTCGACTAT TCGGGCCGTT CGGTGATCGT CACCGGTCCC
GAACTCAAGC TGCACCAGTG CGGCCTGCCC AAGAAGATGG CGCTCGAGCT TTTCAAGCCG
TTCATCTATG CGCGCCTCGA CGCCAAGGGT CTGTCGATGA CCCTCAAGCA GGCGAAGAAG
TGGGTCGAGA AGGAGCGCAA GGAAGTCTGG GACATCCTCG ACGAGGTTAT TCGCGAGCAC
CCGGTCCTCC TGAACCGTGC CCCGACGCTC CACCGCCTCG GCATCCAGGC GTTCGAGCCG
GTGCTGATCG AGGGCAAGGC GATCCAGCTG CACCCGCTGG TCTGCGCCGC GTTCAACGCC
GACTTCGACG GCGACCAGAT GGCGGTCCAC GTCCCGCTCT CGCTGGAAGC CCAGCTGGAA
GCGCGCGTGC TGATGATGTC GACCAACAAC ATCCTCAGCC CCGCAAACGG CAAGCCGATC
ATCGTGCCGT CGCAGGACAT GGTTCTCGGC CTCTATTATC TCTCGCTGGA GCGCGAAGGC
GAGCCGGGCG AAGGCATGTT GCTCGCCGAT ATGGCCGAAG TCCATCAGGC GCTGCATATC
GGCGCGGTCA CGCTGCACTC GAAAATCATC AGCCGCGTTC CGCAGACCGA CGAGAAGGGC
AATGAATATC TGAAGCGCTT TGAAACCACG CCGGGCCGTA TGCTGATCGG CGAATGCCTG
CCGAAGTCGC ACACTGTGCC CTTTGACGTC GTCAACCGCC TTCTGACCAA GAAGGAAATC
GGCGACGTGA TCGACCAGGT CTATCGCCAT ACCGGCCAGA AGGAGACGGT GCTGTTCGCC
GACGCCATCA TGGCGCTGGG TTTCCGTCAT GCTTTCAAGG CGGGCATCTC GTTCGGCAAG
GACGACATGA TCATTCCGGC TTCGAAGGAG CAGCTGGTCG ACGAAACCCG CTCGCTGGTG
AAGGATTTCG AGCAGCAGTA TCAGGACGGC CTGATCACGC AGCAGGAAAA ATATAACAAG
GCGATCGATG CCTGGTCGCA GTGCGGCGAC AAGGTCGCGA ACGCGATGAT GGACGAAATC
CGCGCTACGC CGAAGCTGCC CGACGGCCGT CTGGCCCCGA TCAACTCCAT CTATATGATG
GCGCATTCGG GTGCCCGCGG CTCGCAGGCA CAGATGAAGC AGCTCGCCGG CATGCGCGGC
CTGATGGCCA AGCCGTCGGG CGAGATCATC GAAACGCCGA TCATCTCGAA CTTCAAGGAA
GGCCTGACCG TTCTCGAGTA TTTCAACTCG ACCCACGGTG CGCGCAAGGG TCTGGCCGAT
ACGGCGCTCA AGACGGCAAA CTCGGGTTAT CTGACCCGCC GTCTGGTCGA CGTGTCGCAG
GATTGCGTCG TGATCGAGGA AGATTGCGGC ACCACCCGCG GCATGGAAAT GCGCGCGATC
ATCCAGGGCG GCTCGACGAT CGCCTCGCTC GGCGAGCGCA TCCTCGGTCG CACGACGCTG
GAAGACGTCG TCGACAAGGA CGGCAATGTC ATCGCGCCCG TCGGCACCTT GCTTGACGAA
GCGACAACGC AGCGGATCGA AGAGGCCGAG GTCCAGTCGG TCAAGATTCG CTCGCCGCTC
GTTTGCGAAG CGACGCTGGG CGTTTGCGGC AAATGCTATG GCCGCGACCT GGCCCGCGGC
ACGCCGGTCA ATATCGGCGA AGCGGTGGGG GTTATCGCTG CGCAGTCGAT CGGCGAACCC
GGCACCCAGC TGACCATGCG CACCTTCCAC ATTGGCGGGG CGGCGCAGGT CAACGAACAG
TCGAACGTCG AGGCGATTTC GGACGGTACG ATCGAATATC GCGACATGGC GACGATCGTC
GACCAGCGCG GCCGCCGCCT GGCGCTGTCG CGTTCGGGCG AGATCGCGAT CATCGACAGC
GAAGGCCGCG AACGCGCGTC GCACAAGCTG CCCTATGGTG CGCAGATCAT GCACAAGGAC
GGCGAAAAGG TGAAGAAGGG CGACCGGATT GCCGAATGGG ATCCGTTCAC CATGCCGCTG
ATCACCGAAA AGCAGGGCGT TGTGAAATAT CAGGATCTGA TCGACGGCAA GACGCTGACC
GAACAGGTCG ACGAAGCGAC GGGCATCGCC CAGCGCGTGG TGATCGAATA TCGCGCCGCC
GGACGCAGCA AGAAGGAAGA CCTTCAGCCG CGCATCACCC TGCTCGACGA CGCATCGGGC
GAAGCTGCAC GCTATCTGCT CGCGGTCGGC ACGATGATCT CAGTCGAGGA CGGGCAGACG
GTGCAGGCGG GCGACGTACT GGCGCGTGTG AGCCGCGAAG CGTCGAAGAC GCGCGACATC
ACCGGCGGTC TGCCGCGGGT TGCCGAGCTG TTCGAAGCGC GCATTCCGAA GGATAACAGC
GTCATCGCGA AGATCAGCGG CCGCATTGAG TTCGTCAAGG ACTACAAGGC GAAGCGCAAG
ATCGCGATCG TTCCGGAAGA AGGCGATCCG ATCGAATATC TGATCCCCAA GTCGAAGGTG
CTGGAAGTGC AGGAAGGCGA CATGGTCAAG CGCGGCGATG CGCTGATCTC CGGCTCGCCG
AACCCGCATG ACATCCTCGA CGTCATGGGC GTCGAGGCGC TGGCCGAATA TCTGGTCGCG
GAGATCCAGG AAGTCTATCG ACTCCAGGGC GTGAAGATCA ACGACAAGCA CATCGAGGTG
ATCGTTCGCC AGATGCTGCA GAAGGTCGAG ATCACCGATG GCGGCGACAC CACGCTGCTG
CCGGGCGAAC AGCTCGATTA TCTGGAGATG ATGGAATATA ACGCCAAACT GCCCAAGAAC
GGCAAACCGG CCGAGGGCCG CCCGGTCCTC CTCGGCATCA CCAAGGCGAG CCTGCAAACG
CGCAGCTTCG TTTCGGCGGC GTCCTTCCAG GAAACGACCC GCGTTCTCAC CGAAGCGTCG
GTGCAGGGCA AGGTCGACTC GCTGCAGGGG CTCAAGGAAA ATGTCATCGT CGGCCGCCTC
ATCCCGGCGG GTACCGGCGC TGCCATGAAC CGTGTCCGCG TCACCGCCTC GTCGAAGGAT
GCCGCGCTGC GCGCCGCGAT GCGTGTTGCG AACCAGGAGC ATCTCATTGC GCCGCGGACC
GCAGCCGAGG AGCATGCGGC CGAACTCGCG CAGGGCCCCG AAGCGGCGAT CGGCGACGAT
CCGCTGGGCA AGGTGCAGGG TGAGGATTTC ACGACCGACG ATGTGATGGT CGAGGAACGC
CCCGAAGGCG CCAGCGAGGA ATAA
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| Protein sequence | MNQLTNFMNP VAKPETFDMI KIGIASPERI RSWSFGEIKK PETINYRTFK PERDGLFCAR
IFGPIKDYEC LCGKYKRMKY KGIVCEKCGV EVTVTKVRRE RMGHIELAAP VAHIWFLKSL
PSRIGLLLDM QLKQLERVLY FEAYIVLEPG LTPLEKFQLL TEDELLDAQD EYGEDAFSAG
IGAEAIRTLL ENLDLEQERT DLMEELATTK SELKPKKIIK RLKVVESFIE SGNRPEWMIL
EVVPVIPPEL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLMELRAPD IIVRNEKRML
QEAVDALFDN GRRGRTITGA NKRPLKSLSD MLKGKQGRFR QNLLGKRVDY SGRSVIVTGP
ELKLHQCGLP KKMALELFKP FIYARLDAKG LSMTLKQAKK WVEKERKEVW DILDEVIREH
PVLLNRAPTL HRLGIQAFEP VLIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLSLEAQLE
ARVLMMSTNN ILSPANGKPI IVPSQDMVLG LYYLSLEREG EPGEGMLLAD MAEVHQALHI
GAVTLHSKII SRVPQTDEKG NEYLKRFETT PGRMLIGECL PKSHTVPFDV VNRLLTKKEI
GDVIDQVYRH TGQKETVLFA DAIMALGFRH AFKAGISFGK DDMIIPASKE QLVDETRSLV
KDFEQQYQDG LITQQEKYNK AIDAWSQCGD KVANAMMDEI RATPKLPDGR LAPINSIYMM
AHSGARGSQA QMKQLAGMRG LMAKPSGEII ETPIISNFKE GLTVLEYFNS THGARKGLAD
TALKTANSGY LTRRLVDVSQ DCVVIEEDCG TTRGMEMRAI IQGGSTIASL GERILGRTTL
EDVVDKDGNV IAPVGTLLDE ATTQRIEEAE VQSVKIRSPL VCEATLGVCG KCYGRDLARG
TPVNIGEAVG VIAAQSIGEP GTQLTMRTFH IGGAAQVNEQ SNVEAISDGT IEYRDMATIV
DQRGRRLALS RSGEIAIIDS EGRERASHKL PYGAQIMHKD GEKVKKGDRI AEWDPFTMPL
ITEKQGVVKY QDLIDGKTLT EQVDEATGIA QRVVIEYRAA GRSKKEDLQP RITLLDDASG
EAARYLLAVG TMISVEDGQT VQAGDVLARV SREASKTRDI TGGLPRVAEL FEARIPKDNS
VIAKISGRIE FVKDYKAKRK IAIVPEEGDP IEYLIPKSKV LEVQEGDMVK RGDALISGSP
NPHDILDVMG VEALAEYLVA EIQEVYRLQG VKINDKHIEV IVRQMLQKVE ITDGGDTTLL
PGEQLDYLEM MEYNAKLPKN GKPAEGRPVL LGITKASLQT RSFVSAASFQ ETTRVLTEAS
VQGKVDSLQG LKENVIVGRL IPAGTGAAMN RVRVTASSKD AALRAAMRVA NQEHLIAPRT
AAEEHAAELA QGPEAAIGDD PLGKVQGEDF TTDDVMVEER PEGASEE
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