Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1463 |
Symbol | |
ID | 4081274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1518329 |
End bp | 1520797 |
Gene Length | 2469 bp |
Protein Length | 822 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638009828 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_616509 |
Protein GI | 103486948 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000224426 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTTGC GGCGGCGCCG ACGAAGGCCT GTTTGCGCCG CGCGGTCGAT CCCGCGGCCC GAACATGCCG TGCTGAAACG CGCGTACCGC GCGTACAGGG ACAGCTACGC CTTTCGCGAC AAGATCGCCA TCGACGGTTT CGACTATCCT TTGAAGTCCT TCGACCCCGT CGAGGAACTC ATTCGCCGCA ACTACCGAAC GACAATATCC GGGCCGTGCT CGGTGGCAAT GTCCGCTGCC TGCTCGCCCA ACTCTGGGGG TAAGACCATG AACAAGGGAT TTTTTGGCGC AGCAAGCCTG GCCGCGATGG CCGTTGCGAT GCCGGCTTAT GCCGAAGAAG CGAGCAGCGA CGAACGTGAC ATCGTCGTGA CGGCGCAAAA GCGCGAAGAG CGATTGATCG ACGTGCCGCA ATCGGTCAGT GTCGTATCCG GCGAAGCGCT GGAAAACATT CAGGCAACCA ATTTCTCGGA TTATCTGAAA CTCGTCCCCG GCCTGCAACT CAATCAGGCG ACGCCGGGTT TCGGTCGCCT CGTATTGCGC GGTGTCAACA CCGGCGGCGT CGCCTCGACG GTTGCCGTCT ATCAGGACGA AACGACCTTT GGGTCGAGCA GCGGTCTGGT CAACGGCGCG ATCCTGGCGG GTGACTTCGA CACGTTCGAC ATTGAACGGA TCGAGGTGCT GCGAGGACCG CAGGGCACGA TCTATGGCTC AAGCTCGATG GGCGGTGTTC TCAAATATGT GACAAACAAG CCCGACACCT CGGCCTTTGA GGTTCGCGCA CGCGGCAGCG TTGAAACGAC GACCGGGGGC GATGAATCAT ATCTTGGCAG TGCGGTTGTC AATCTGCCTC TTGGCGAAAC CCTCGCGCTC CGCGCGTCGG GCTTTTATCG TGATTTCGGC GGTTTCATCG ACTCTATCGG AACCGGCGGC GCGGATATCG AGTCCGACAT CAACAGTTCG AAAAGCTATG GCGGCCGCGC CTCGGTGCTG TTCAAGCCGA GCGAGACATT CTCGATTCAA CTTGCCGCCT ATCTTCAGAA CCTGGAGACC GATGCCTCGA ACAGCGTGGA CAGCGATCCA TCGACGGGTC GCACGCTATA CGGGCGCCTG TCGCAATCGC AATTCGTGCC CGAGTTCACC GATGTGCGCT ATCGCGTCTA CAGCGGGGTG GTCGATGCCG ATCTCGGCTT TGCGAACCTC GTGTCGGCGA CCAGCTACAG CACCTTGTCG CAATCGTTTC GCGGCGATCT TACGACGCAG TTCGGCGCAT TGATCGAAGC GGTGTTTGGA ACGCCCAACG ACTTTTTCCA GGGGCAGCTG ACGCGGGTGA AGCGCTTTAC GCAGGAAGTG CGCCTGCAAT CGCCTGAAAG CGACCGTTTC GAATGGCTCA TTGGAGTCTA TTATACCCGC GAACGGGGCC TAATTGACCA GGATTTCAAC GCCGTCGAGC CGGGCACGCT CACCCCGATC GCCGGGTTGC CGCTGCTGGG CGTCGCGACG ATCAACTCGC GCTATCGCGA ACTCGCAGGC TTCGCCAACG CCACGATCCA TTTCGGCGAC CGTTTCAACC TCAGTTTCGG GGGGCGTTAC AGTGGCAACA AGCAATCCGC CGTCCAGGTG TCCGACGGCG TCCTCGCGGG CGGACCCAAT GCTTTGCCCA AGGCGCGCTC GTCCGAAGAC GTCTTCACTT TCTCGGTCGC CCCGCAGTTC GAGGTTAGTG ACAACGTGAC CATCTATGCG CGCGTTGCGA AGGGTTTCCG TCCCGGTGGG CCGAACGTGC TGGCGCCGGG GGCGCCGCCG GAAATCGCCA CCTATGGCTC GGACTCGCTG ATCAGTTACG AGCTTGGCCT CAAGGCGGAA ACGGTCGATC GAACCTTCTC CATCGATATC GCGGCCTTCC ACATCGACTG GAAGGACATT CAGGTGTTCG GACAGGTCAA CGATTTCGGT GTCAACTTCA ATGGCGGCAA GGCCAAGAGC GATGGCGTGG AGTTCACGAC GACGCTGCGT CCCGCACAGG GGCTTAGCTT CTCGCTCAAC GGCGCGTGGA CCAACGCGAA GCTGAAGGAC GATACGCCGC CGCTGGTCGG CGGCTTGTCG GGTGATCGCC TGCCATATAC CCCTGAATTC AGTATCGGCG CGAACGCCGA TTATGAATGG GAACTCGGCG GCGATACCAC GGCTTATGTC GGCGCATCGG TGCGCAGCCT GTCGAAACAA CCGGCGGGCT ATGACCTTGC CTTTCGTATC GCCAATGGGC GCCAACGCTA TCTGCCGGCC TATGAAGTGG TCGATCTGCG TGCGGGGGTT GATTTCGGAC GATATTCGAT CGAGCTTTAT GCAAAGAATC TGACTGACAG CGAAGGCAAG ACGTCGCTGG AGGCGCCGGC AAACATCCCG TTCGGCGCTG CCGGAACCGG AGTTATCCGG CCACGGACGA TCGGTGCTAC CCTGACCGCC GGCTTTTGA
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Protein sequence | MPLRRRRRRP VCAARSIPRP EHAVLKRAYR AYRDSYAFRD KIAIDGFDYP LKSFDPVEEL IRRNYRTTIS GPCSVAMSAA CSPNSGGKTM NKGFFGAASL AAMAVAMPAY AEEASSDERD IVVTAQKREE RLIDVPQSVS VVSGEALENI QATNFSDYLK LVPGLQLNQA TPGFGRLVLR GVNTGGVAST VAVYQDETTF GSSSGLVNGA ILAGDFDTFD IERIEVLRGP QGTIYGSSSM GGVLKYVTNK PDTSAFEVRA RGSVETTTGG DESYLGSAVV NLPLGETLAL RASGFYRDFG GFIDSIGTGG ADIESDINSS KSYGGRASVL FKPSETFSIQ LAAYLQNLET DASNSVDSDP STGRTLYGRL SQSQFVPEFT DVRYRVYSGV VDADLGFANL VSATSYSTLS QSFRGDLTTQ FGALIEAVFG TPNDFFQGQL TRVKRFTQEV RLQSPESDRF EWLIGVYYTR ERGLIDQDFN AVEPGTLTPI AGLPLLGVAT INSRYRELAG FANATIHFGD RFNLSFGGRY SGNKQSAVQV SDGVLAGGPN ALPKARSSED VFTFSVAPQF EVSDNVTIYA RVAKGFRPGG PNVLAPGAPP EIATYGSDSL ISYELGLKAE TVDRTFSIDI AAFHIDWKDI QVFGQVNDFG VNFNGGKAKS DGVEFTTTLR PAQGLSFSLN GAWTNAKLKD DTPPLVGGLS GDRLPYTPEF SIGANADYEW ELGGDTTAYV GASVRSLSKQ PAGYDLAFRI ANGRQRYLPA YEVVDLRAGV DFGRYSIELY AKNLTDSEGK TSLEAPANIP FGAAGTGVIR PRTIGATLTA GF
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