Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1453 |
Symbol | |
ID | 4081264 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1502354 |
End bp | 1504453 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638009818 |
Product | penicillin-binding protein 1A |
Protein accession | YP_616499 |
Protein GI | 103486938 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.8478 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTGTT GGGGTTGTAA TACGGCCTCA AGCATGACCT GGTTCCGCAA ACCCGAAGGC TCCGATCCCA CCCTTGCGAT GACGCCGGGC GGGCCGTTCG CCGACGTTCC GCCGTCCCGG TCGCTGCCGC CGTCGTCGCC GCTTCCTGAA TCGCGGCGGC GCAAATGGGT GCGCCGCGTC GCGCGCGGCT TTGCGGTTCT GTGCGTGATT TTCATCCTGC TCGTCGGCTG GCTCGCGCTC ACCGCGCCGC TGTCGAAATC GCTCGAACCG ATCGCGCCGC CGCAGATTAC CCTGCTCGCA TCCGACGGAA CGCCGATCGC GCGGTCGGGG GCGATCGTCG ACCGGCCGGT CAAGACGCGC GACCTGCCGG CTCATGTCAC GGGCGCCTTT CTGGCGATCG AGGACCGGCG TTTCTATTCG CACTGGGGTA TCGACCCGCG CAGCATCGCG CGCGCGGTGT GGAGCAACAT CACGGGCGGC CCGACGCAGG GCGGCAGCAC GATCACCCAG CAGCTTGCGA AGTTCACCTT TCTGACGCCG AAGCGCACGC TGGGGCGCAA GGCGCGCGAG GCGCTGATCG CTTTCTGGCT GGAGGCATGG CTGACGAAGG ACGAGATACT CGAACGCTAT CTGTCGAACG CCTATTTCGG CGACAATACC TATGGGCTGC GCGCTGCGTC GCTGCATTAT TTCTATCGCC AGCCCGAAAA CCTGACCCCG GCGCAGGCGG CGATGCTCGC GGGGCTGGTA CAGGCGCCGT CGCGTCTTGC GCCGACGCGC AATCCCGACC TCGCCGAAAA GCGGATGAAG CTGGTGTTGA AGGCGATGGT CGCGACAGGC CGACTGACCG AGCGACAGGC GCGCGCGATC CGCACCCCGC GCATCGATGT GCGCACGCGC AACACCTTGC CCACGGGCAC CTATTTCGCC GACTGGGCGC TGCCCGAGGC GCGCAAATTG AGCGACGTCG GCTATTCGCG CCAGACGATC GCGACGACGC TCGACGCGCG GCTCCAGTCG ATCGCGCGGC GCGTCACCAG CCGCGCGGGG CTTGGCAAGG CGCAGGTCGC GCTCGTCGCG ATGCGCCCGA ATGGCGAGGT CGTCGCGATG ATCGGCGGCA AGGATTATGC CGCCTCGCCC TTCAACCGCG CGACGCAGGC GCGGCGTCAG CCGGGATCGA CCTTCAAGCT GTTCGTCTAT CTCGCCGCGC TGCGCGCCGG GTGGGAGCCC GATGACAAGA TCGACAACGG CCCGATCGAA ACCGGCGCCT ATCGCCCCAG GAACGCGGGC GGCGCCTATT CGCCGCGGAT CAGCCTGGAG GACGCCTTTG CGTCGTCGAG CAATGTCGCG GCGGTGCGCC TGTTCGCCGA AGTCGGCGGC GACAAGGTGA TCGACATGGC GCGCGACCTG GGCGTTACCG CGCCGCTCGC GGAGGGGGAT CCCAGCCTGG CGCTCGGCAC GTCCAGCATG ACCCTCCTTG AACTGACGGC GGCCTATGCC GCGGTCGCGG CGAACCGCTA TCCGGTGAAG CCCCATGCGT TCAGCGAGGA GGAAAAGGGC TGGCTCGAAA ATCTCGTATG GGGCCCGTCG CGGTTCAGCT CGCGCGTGCA TCGCGATATG GAAAAGATGC TGCGCGCCGC CGTCAATCGC GGTACCGGGC GCGCCGCGCG GCTGCCGCAG CCCAATTTCG GCAAGACGGG CACCAGCCAG GATAATCGCG ACGCGCTGTT CGTCGGCTAT GCCAATGGTC TCGTCGTCGG CGTGTGGATC GGCAATGACG ACAACAGCCC GCTTCGGGGC ATTTCGGGCG GCGGCCTGCC CGCGCGCATG TGGCGCGACT TCATGAGGCA GGCATCGGGG CAAAAGGCTG CGCCGCGACC GCGCCCCGTC GATCCGACCG GCCCCGTCGA GCCGCAGGAT ACACCGACCA TTCCCGATAT CGGCGACATC CCCGTCGGCG ACCGGACACG CGTGGGCATT GAAGGTGGCG ACGCGGTAAT CTCGACCGAA ATCAATGGCA GCCGGATCGA CCTTCGCCTG CCGATCGAGC AGCGCCCGCC CGAACCGACC CGGCCCGATG CAGGCGCGCC GCCGCCCTAG
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Protein sequence | MLCWGCNTAS SMTWFRKPEG SDPTLAMTPG GPFADVPPSR SLPPSSPLPE SRRRKWVRRV ARGFAVLCVI FILLVGWLAL TAPLSKSLEP IAPPQITLLA SDGTPIARSG AIVDRPVKTR DLPAHVTGAF LAIEDRRFYS HWGIDPRSIA RAVWSNITGG PTQGGSTITQ QLAKFTFLTP KRTLGRKARE ALIAFWLEAW LTKDEILERY LSNAYFGDNT YGLRAASLHY FYRQPENLTP AQAAMLAGLV QAPSRLAPTR NPDLAEKRMK LVLKAMVATG RLTERQARAI RTPRIDVRTR NTLPTGTYFA DWALPEARKL SDVGYSRQTI ATTLDARLQS IARRVTSRAG LGKAQVALVA MRPNGEVVAM IGGKDYAASP FNRATQARRQ PGSTFKLFVY LAALRAGWEP DDKIDNGPIE TGAYRPRNAG GAYSPRISLE DAFASSSNVA AVRLFAEVGG DKVIDMARDL GVTAPLAEGD PSLALGTSSM TLLELTAAYA AVAANRYPVK PHAFSEEEKG WLENLVWGPS RFSSRVHRDM EKMLRAAVNR GTGRAARLPQ PNFGKTGTSQ DNRDALFVGY ANGLVVGVWI GNDDNSPLRG ISGGGLPARM WRDFMRQASG QKAAPRPRPV DPTGPVEPQD TPTIPDIGDI PVGDRTRVGI EGGDAVISTE INGSRIDLRL PIEQRPPEPT RPDAGAPPP
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