Gene Sala_1453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1453 
Symbol 
ID4081264 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1502354 
End bp1504453 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content68% 
IMG OID638009818 
Productpenicillin-binding protein 1A 
Protein accessionYP_616499 
Protein GI103486938 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.8478 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTGTT GGGGTTGTAA TACGGCCTCA AGCATGACCT GGTTCCGCAA ACCCGAAGGC 
TCCGATCCCA CCCTTGCGAT GACGCCGGGC GGGCCGTTCG CCGACGTTCC GCCGTCCCGG
TCGCTGCCGC CGTCGTCGCC GCTTCCTGAA TCGCGGCGGC GCAAATGGGT GCGCCGCGTC
GCGCGCGGCT TTGCGGTTCT GTGCGTGATT TTCATCCTGC TCGTCGGCTG GCTCGCGCTC
ACCGCGCCGC TGTCGAAATC GCTCGAACCG ATCGCGCCGC CGCAGATTAC CCTGCTCGCA
TCCGACGGAA CGCCGATCGC GCGGTCGGGG GCGATCGTCG ACCGGCCGGT CAAGACGCGC
GACCTGCCGG CTCATGTCAC GGGCGCCTTT CTGGCGATCG AGGACCGGCG TTTCTATTCG
CACTGGGGTA TCGACCCGCG CAGCATCGCG CGCGCGGTGT GGAGCAACAT CACGGGCGGC
CCGACGCAGG GCGGCAGCAC GATCACCCAG CAGCTTGCGA AGTTCACCTT TCTGACGCCG
AAGCGCACGC TGGGGCGCAA GGCGCGCGAG GCGCTGATCG CTTTCTGGCT GGAGGCATGG
CTGACGAAGG ACGAGATACT CGAACGCTAT CTGTCGAACG CCTATTTCGG CGACAATACC
TATGGGCTGC GCGCTGCGTC GCTGCATTAT TTCTATCGCC AGCCCGAAAA CCTGACCCCG
GCGCAGGCGG CGATGCTCGC GGGGCTGGTA CAGGCGCCGT CGCGTCTTGC GCCGACGCGC
AATCCCGACC TCGCCGAAAA GCGGATGAAG CTGGTGTTGA AGGCGATGGT CGCGACAGGC
CGACTGACCG AGCGACAGGC GCGCGCGATC CGCACCCCGC GCATCGATGT GCGCACGCGC
AACACCTTGC CCACGGGCAC CTATTTCGCC GACTGGGCGC TGCCCGAGGC GCGCAAATTG
AGCGACGTCG GCTATTCGCG CCAGACGATC GCGACGACGC TCGACGCGCG GCTCCAGTCG
ATCGCGCGGC GCGTCACCAG CCGCGCGGGG CTTGGCAAGG CGCAGGTCGC GCTCGTCGCG
ATGCGCCCGA ATGGCGAGGT CGTCGCGATG ATCGGCGGCA AGGATTATGC CGCCTCGCCC
TTCAACCGCG CGACGCAGGC GCGGCGTCAG CCGGGATCGA CCTTCAAGCT GTTCGTCTAT
CTCGCCGCGC TGCGCGCCGG GTGGGAGCCC GATGACAAGA TCGACAACGG CCCGATCGAA
ACCGGCGCCT ATCGCCCCAG GAACGCGGGC GGCGCCTATT CGCCGCGGAT CAGCCTGGAG
GACGCCTTTG CGTCGTCGAG CAATGTCGCG GCGGTGCGCC TGTTCGCCGA AGTCGGCGGC
GACAAGGTGA TCGACATGGC GCGCGACCTG GGCGTTACCG CGCCGCTCGC GGAGGGGGAT
CCCAGCCTGG CGCTCGGCAC GTCCAGCATG ACCCTCCTTG AACTGACGGC GGCCTATGCC
GCGGTCGCGG CGAACCGCTA TCCGGTGAAG CCCCATGCGT TCAGCGAGGA GGAAAAGGGC
TGGCTCGAAA ATCTCGTATG GGGCCCGTCG CGGTTCAGCT CGCGCGTGCA TCGCGATATG
GAAAAGATGC TGCGCGCCGC CGTCAATCGC GGTACCGGGC GCGCCGCGCG GCTGCCGCAG
CCCAATTTCG GCAAGACGGG CACCAGCCAG GATAATCGCG ACGCGCTGTT CGTCGGCTAT
GCCAATGGTC TCGTCGTCGG CGTGTGGATC GGCAATGACG ACAACAGCCC GCTTCGGGGC
ATTTCGGGCG GCGGCCTGCC CGCGCGCATG TGGCGCGACT TCATGAGGCA GGCATCGGGG
CAAAAGGCTG CGCCGCGACC GCGCCCCGTC GATCCGACCG GCCCCGTCGA GCCGCAGGAT
ACACCGACCA TTCCCGATAT CGGCGACATC CCCGTCGGCG ACCGGACACG CGTGGGCATT
GAAGGTGGCG ACGCGGTAAT CTCGACCGAA ATCAATGGCA GCCGGATCGA CCTTCGCCTG
CCGATCGAGC AGCGCCCGCC CGAACCGACC CGGCCCGATG CAGGCGCGCC GCCGCCCTAG
 
Protein sequence
MLCWGCNTAS SMTWFRKPEG SDPTLAMTPG GPFADVPPSR SLPPSSPLPE SRRRKWVRRV 
ARGFAVLCVI FILLVGWLAL TAPLSKSLEP IAPPQITLLA SDGTPIARSG AIVDRPVKTR
DLPAHVTGAF LAIEDRRFYS HWGIDPRSIA RAVWSNITGG PTQGGSTITQ QLAKFTFLTP
KRTLGRKARE ALIAFWLEAW LTKDEILERY LSNAYFGDNT YGLRAASLHY FYRQPENLTP
AQAAMLAGLV QAPSRLAPTR NPDLAEKRMK LVLKAMVATG RLTERQARAI RTPRIDVRTR
NTLPTGTYFA DWALPEARKL SDVGYSRQTI ATTLDARLQS IARRVTSRAG LGKAQVALVA
MRPNGEVVAM IGGKDYAASP FNRATQARRQ PGSTFKLFVY LAALRAGWEP DDKIDNGPIE
TGAYRPRNAG GAYSPRISLE DAFASSSNVA AVRLFAEVGG DKVIDMARDL GVTAPLAEGD
PSLALGTSSM TLLELTAAYA AVAANRYPVK PHAFSEEEKG WLENLVWGPS RFSSRVHRDM
EKMLRAAVNR GTGRAARLPQ PNFGKTGTSQ DNRDALFVGY ANGLVVGVWI GNDDNSPLRG
ISGGGLPARM WRDFMRQASG QKAAPRPRPV DPTGPVEPQD TPTIPDIGDI PVGDRTRVGI
EGGDAVISTE INGSRIDLRL PIEQRPPEPT RPDAGAPPP