Gene Sala_1450 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1450 
Symbol 
ID4081532 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1499570 
End bp1500985 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content70% 
IMG OID638009815 
ProductRND efflux system, outer membrane lipoprotein, NodT 
Protein accessionYP_616496 
Protein GI103486935 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTAAGG CGATCCTGCT TCTCATCGCA ACGACGCTCG CCGGATGCGT CGACATGGCG 
CCTCCGCACG AGCGGCCACC GCTGGCGACC GCCGCCGACT ATCCCGCCGA GTTCGCGGGC
GGCGCGACGC CGGGGCAGCG CGCGACCGAC ATCGCGTGGC GCGACTTCTT CGCCGACCCG
CGGCTCGAAA TGCTGATCGC GCAGGCGATC GCGCATAATC GCGACCTTGC CGTCGCCGTG
GCGCAGATCG AGGAGGCGCG CGGCCTCTAT CGCATCCAGG CGGCCGACCG CCTGCCGACG
GTCGGCGCCA GCGCCGATGC AGCGCGGACG CGCGGCCCGT CGGTGACGGG CGTAGGCACC
GACACGACGA GCCGCTATTC GGTCGGCGTT GGCGTCACCT CGTTCGAGCT CGATTTCTGG
GGGCGGGTCA GGAATCTCTC CGAAGCGGCG CGCAGCCAAT ATCTTGCGAC CGAGGCGGCC
GAGCGCACTT TTCGCCTCGC GCTTGTGCGC GATGTCGCCT CGACCTATTT CGCTTCGCGC
GGCGCCGAGG AGCAGATCCA GCTTGCCGAA GCGACGGTGG CGAGCCGCAA GGAGGGACTG
CGCATCGCCC GGCGCCGCCT CGATGCCGGG GTCACATCGG CCCTCGACTA TCGCCAGTCG
GAAACGCTGC TGACGCAAGC CGAAACGCAG CTCGCGAGCC TGAAGCTCGG CAAGGCGCAG
GCCGACAATT TCCTCGCCGT GCTCACTGGC GGCCCGGTTA GCGAGCCTCT GCTCGCGCCG
CTTCCGCTCG TCGCGCAGGC GGGGGCACCC GCGCTGACCG CGGGGCTGCC GTCCGACCTG
CTCGTCGCGC GCCCCGACAT TGTCGCGACC GAGGAACGGC TGCGCGCCGC GCGCGCCAAT
GTCGGCGCGG CGCGTGCCGC CTTTTTCCCG TCGATCTCGC TCACCGGCAG TTTCGGTTTC
GCCTCAGGCG CGCTCGACGA CCTGTTCGGC GACGATGGCA TGACATGGAC TTTCGGCCCG
TCGATCAGCC TGCCGATCTT CGACTTCGGT CGGCGGCAAG GCAATCTGAC GGTCGCCGAG
GCGCGCGAGG ACATCGCCGT CGCGGCCTAT GAACGCACCG TGCAGGGCGC GTTCCGCGAG
GTCGCCGACG CGCTCGCCGG GCGGCGTTAT CTGGCCGAAC AGGTCGAAGC GCAGGAGCGC
GGCACGCTGG CGACGCGGCA GATCGCCGAC CTGGCGCGCA AGCGCTATCG CGAGGGGGTG
TCGACCTATC TCGAAGTGCT CGACGCCGAA CGCAACCTGT TTGCCGCCGA ACAGACGCTG
ATCGAACTGC GCCGTGCGCA GGTCGACAAT CTGGTGACGC TTTATGTCGC GCTGGGTGGC
GGGCTGGTCG AACGTGCGGG AAGCGCGGCG CGATGA
 
Protein sequence
MRKAILLLIA TTLAGCVDMA PPHERPPLAT AADYPAEFAG GATPGQRATD IAWRDFFADP 
RLEMLIAQAI AHNRDLAVAV AQIEEARGLY RIQAADRLPT VGASADAART RGPSVTGVGT
DTTSRYSVGV GVTSFELDFW GRVRNLSEAA RSQYLATEAA ERTFRLALVR DVASTYFASR
GAEEQIQLAE ATVASRKEGL RIARRRLDAG VTSALDYRQS ETLLTQAETQ LASLKLGKAQ
ADNFLAVLTG GPVSEPLLAP LPLVAQAGAP ALTAGLPSDL LVARPDIVAT EERLRAARAN
VGAARAAFFP SISLTGSFGF ASGALDDLFG DDGMTWTFGP SISLPIFDFG RRQGNLTVAE
AREDIAVAAY ERTVQGAFRE VADALAGRRY LAEQVEAQER GTLATRQIAD LARKRYREGV
STYLEVLDAE RNLFAAEQTL IELRRAQVDN LVTLYVALGG GLVERAGSAA R