Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1450 |
Symbol | |
ID | 4081532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1499570 |
End bp | 1500985 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 638009815 |
Product | RND efflux system, outer membrane lipoprotein, NodT |
Protein accession | YP_616496 |
Protein GI | 103486935 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTAAGG CGATCCTGCT TCTCATCGCA ACGACGCTCG CCGGATGCGT CGACATGGCG CCTCCGCACG AGCGGCCACC GCTGGCGACC GCCGCCGACT ATCCCGCCGA GTTCGCGGGC GGCGCGACGC CGGGGCAGCG CGCGACCGAC ATCGCGTGGC GCGACTTCTT CGCCGACCCG CGGCTCGAAA TGCTGATCGC GCAGGCGATC GCGCATAATC GCGACCTTGC CGTCGCCGTG GCGCAGATCG AGGAGGCGCG CGGCCTCTAT CGCATCCAGG CGGCCGACCG CCTGCCGACG GTCGGCGCCA GCGCCGATGC AGCGCGGACG CGCGGCCCGT CGGTGACGGG CGTAGGCACC GACACGACGA GCCGCTATTC GGTCGGCGTT GGCGTCACCT CGTTCGAGCT CGATTTCTGG GGGCGGGTCA GGAATCTCTC CGAAGCGGCG CGCAGCCAAT ATCTTGCGAC CGAGGCGGCC GAGCGCACTT TTCGCCTCGC GCTTGTGCGC GATGTCGCCT CGACCTATTT CGCTTCGCGC GGCGCCGAGG AGCAGATCCA GCTTGCCGAA GCGACGGTGG CGAGCCGCAA GGAGGGACTG CGCATCGCCC GGCGCCGCCT CGATGCCGGG GTCACATCGG CCCTCGACTA TCGCCAGTCG GAAACGCTGC TGACGCAAGC CGAAACGCAG CTCGCGAGCC TGAAGCTCGG CAAGGCGCAG GCCGACAATT TCCTCGCCGT GCTCACTGGC GGCCCGGTTA GCGAGCCTCT GCTCGCGCCG CTTCCGCTCG TCGCGCAGGC GGGGGCACCC GCGCTGACCG CGGGGCTGCC GTCCGACCTG CTCGTCGCGC GCCCCGACAT TGTCGCGACC GAGGAACGGC TGCGCGCCGC GCGCGCCAAT GTCGGCGCGG CGCGTGCCGC CTTTTTCCCG TCGATCTCGC TCACCGGCAG TTTCGGTTTC GCCTCAGGCG CGCTCGACGA CCTGTTCGGC GACGATGGCA TGACATGGAC TTTCGGCCCG TCGATCAGCC TGCCGATCTT CGACTTCGGT CGGCGGCAAG GCAATCTGAC GGTCGCCGAG GCGCGCGAGG ACATCGCCGT CGCGGCCTAT GAACGCACCG TGCAGGGCGC GTTCCGCGAG GTCGCCGACG CGCTCGCCGG GCGGCGTTAT CTGGCCGAAC AGGTCGAAGC GCAGGAGCGC GGCACGCTGG CGACGCGGCA GATCGCCGAC CTGGCGCGCA AGCGCTATCG CGAGGGGGTG TCGACCTATC TCGAAGTGCT CGACGCCGAA CGCAACCTGT TTGCCGCCGA ACAGACGCTG ATCGAACTGC GCCGTGCGCA GGTCGACAAT CTGGTGACGC TTTATGTCGC GCTGGGTGGC GGGCTGGTCG AACGTGCGGG AAGCGCGGCG CGATGA
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Protein sequence | MRKAILLLIA TTLAGCVDMA PPHERPPLAT AADYPAEFAG GATPGQRATD IAWRDFFADP RLEMLIAQAI AHNRDLAVAV AQIEEARGLY RIQAADRLPT VGASADAART RGPSVTGVGT DTTSRYSVGV GVTSFELDFW GRVRNLSEAA RSQYLATEAA ERTFRLALVR DVASTYFASR GAEEQIQLAE ATVASRKEGL RIARRRLDAG VTSALDYRQS ETLLTQAETQ LASLKLGKAQ ADNFLAVLTG GPVSEPLLAP LPLVAQAGAP ALTAGLPSDL LVARPDIVAT EERLRAARAN VGAARAAFFP SISLTGSFGF ASGALDDLFG DDGMTWTFGP SISLPIFDFG RRQGNLTVAE AREDIAVAAY ERTVQGAFRE VADALAGRRY LAEQVEAQER GTLATRQIAD LARKRYREGV STYLEVLDAE RNLFAAEQTL IELRRAQVDN LVTLYVALGG GLVERAGSAA R
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