| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1448 |
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| Symbol | |
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| ID | 4081530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1495276 |
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| End bp | 1496406 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638009813 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_616494 |
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| Protein GI | 103486933 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCGCG TTTCTCCTCC CCGCTGCGCC CTCGGCGCCG CACTGGCCCT GCTGCTGGTC
GGCTGTTCGT CCGAAGCGCC GCCTGCGCCA CCGCCTCCCG AAGTGAATAT CGTCACCGTG
CGCGCCCGGC CGGTGCCCAA CGTCATCGAA CTGCCCGGCC GCGTCCAGGC GTATCGGACA
TCGGAGGTCC GGGCGCGTGT CGATGGCATC GTCGAACGCC GCCTGTTCGA CGAGGGCAGT
TTTGTGCGCG CGGGCACCGC TTTGTTCCGC ATCGACCCGC GACAATTGAT CGCGAACGTC
AACGCCGCGC GCGCGCAGCT GGCCCGTGCC CAGGCGACCG CGGCGAATGC GCGGCAGGTG
GTGGCGCGAT ACCAGCCGCT GCTCGCCGAC CAGGCGATCG GCAGACAGGA ATATGACGCC
GCGGTCGCCG CGCAGCGCAC CGCCGAAGCC GACGTGCAGG CGGCGCAGGC CAATCTGGAT
TCGGCACGGT TGAACCTCGG CTATGCGACG GTGACTGCGC CGATTTCGGG GCGCGCACGC
CGCGCCGAAG TAACCGAGGG CGCGCTGGTC AGCGCAGCAC AGGGCACGCT GCTCACCACG
ATCGAACAGA TCGACCGCGT TTACGTCAAT TTCGGCCAGT CGAGTTCGGA CCTGCTGGCG
ACGCGCCGCG ACATGGGATC GGGACGGATC AGCGCGCCGC AGCTCGAAAG GGTCGAGGTG
CAGTTGATCC TCGAGGATGG CAGCGCCTAT CCGGTCGTCG GCCATCTCGA CTTCCTCGAC
CTGTCGATCG ACGAGGCGAC CGGCACCGCC GCGCTGCGCG CGGAGTTTCC GAACCCCAAC
GCCGCCTTGC TTCCCGGCCA GTTCGTACGC GCACGCATCT TTGCCGGCAA TCGCGCCGAC
GGGATGCTGA TCCCGCAGCG CGCGGTCAAG CTGACCGCCG ACGCCGCGAG CGTGATGGTG
CTCGATACGA AAAATGTCGC AACGCCGCGG CCGATCAAGC TCGGTGCGAT GGTCGCGGGT
CAGTGGGCGG TGCTCGATGG GCTGAGACCC GGCGACCGGG TGATCGTCGA CGGGCTGCAA
AAGGTTCAGC CGGGCCAGCC GGTGCGCATC GCGCCGCCTG CGAAACGCTG A
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| Protein sequence | MSRVSPPRCA LGAALALLLV GCSSEAPPAP PPPEVNIVTV RARPVPNVIE LPGRVQAYRT
SEVRARVDGI VERRLFDEGS FVRAGTALFR IDPRQLIANV NAARAQLARA QATAANARQV
VARYQPLLAD QAIGRQEYDA AVAAQRTAEA DVQAAQANLD SARLNLGYAT VTAPISGRAR
RAEVTEGALV SAAQGTLLTT IEQIDRVYVN FGQSSSDLLA TRRDMGSGRI SAPQLERVEV
QLILEDGSAY PVVGHLDFLD LSIDEATGTA ALRAEFPNPN AALLPGQFVR ARIFAGNRAD
GMLIPQRAVK LTADAASVMV LDTKNVATPR PIKLGAMVAG QWAVLDGLRP GDRVIVDGLQ
KVQPGQPVRI APPAKR
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