| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1446 |
|---|
| Symbol | |
|---|
| ID | 4081528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1493113 |
|---|
| End bp | 1494459 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638009811 |
|---|
| Product | Na+/melibiose symporter and related transporters-like protein |
|---|
| Protein accession | YP_616492 |
|---|
| Protein GI | 103486931 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.493361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCAGTT CCGCCCTGCC ATCGGCTATA TCCGCGCCTC GCCTGTTGGC GCTGCGGCCG
CGGGTCGTGG CGGCCTATGC CGCGACCGCG GGGCCGACGG CGATGCTCGC GCTGCCTTTC
AGCGTCTATC TGCCGCCCTA TATCGCCGAA GGCGGGGTGA TTCCGGTGGC GCTGGTCGGG
CTGCTCTTTT CGCTCACGAC GATCTGGGAC GGGGTGGTCG ACCCGCTGAT CGGAACGATG
GTGGACCGCG TTCGCACCGG GCTTGGCGCG CACCGCCGCT GGATGCTGAT CGCGCTGGCG
CCGCTCGGCT TGCTGCTGCT CGCGCTGGTC ATGGTAGGCG ACCGCCTGTC GTTCGCGGCG
CTGTTCCTGA TGATGGTGCT CTTCTACTCC AGCTTCAGCC TGTACGAGGT TGCCCAGCTG
TCGTGGGGGT CGGCGCTCGT GCGCACTCCC GCCGACAGCG CACTGCTCTA CGGAATGCGC
GACTGGTTCG CGAAGATCGC GCTGATCCTG GCCTTTGCCG CGCCCGCAGC GGCACAATTG
CTGATGCCGT CGATCAGCCT GCAGGGACGG ATCATCGCCT ATGCAAGCCT CTTCCTGCTT
CTGGCGCCCG TCGCGATTTA TGCGATCGCG CGTGTCCCGC GGCGCCGCGT CGTCGCCGAG
GCGGGGATCG GCTGGCGCCG GGAAATCCGC GCCTCGTTCG GCTTTCCGCC GCTGATGCTG
CTCTTTGGCG TGCAGTTCCT CAACAGTTTT GCGTTCGGAT CGCTCACCTC GCTTTTCGTC
TTTTTTGCCG ATGCCGTGCT GGGACTCGAC GCGCAGAGCG CGGTGCTCCT GTTTGCCAGC
TTTGTCGGCG GCGCGCTCGC GTCGCCGGTC TGGACTTTTC TCGCGCGGCG CTTCGGCAAG
CCACCCATGA TGATCGGCAT GGCGTTGCTG ATCTCGACGC TGCTCGTCGC CACGCTGGGG
CAGACGCCGC GTGGGCTTGC GCAGGCGACA CTTTTTTCGT TGACGCTCGG GACGGGCTTC
GTCGGGCTGT TGTTCATCCA CTCGATGCTG GCCGACCTGA TCCCGCGCGA CGCCGAGCGC
TGCGGCCGGT CGCGCGCGGC CTTTCTGTTC GCGCTCCTGA ACCTGATGCA GAAGTTCGGC
GTCGCGGCGG CGATCGCCGT CAGCTATGCG ATGCTCGACC TTGTCGGTTT CGATCCGCGG
GACGGCGCTG TGGCGGCGCG CGCGCTGCAT CTCCTCTTCG CGCTCCAGCC GACCGCCAGC
TGGGCGGCGA TGGTGGTCCT GCTCCTGCTG ATGCGCCGCG ACTTCGCCCG CGACCATCCG
CTTGCAATCG CCGCAGCGCG CAAGTAA
|
|---|
| Protein sequence | MASSALPSAI SAPRLLALRP RVVAAYAATA GPTAMLALPF SVYLPPYIAE GGVIPVALVG
LLFSLTTIWD GVVDPLIGTM VDRVRTGLGA HRRWMLIALA PLGLLLLALV MVGDRLSFAA
LFLMMVLFYS SFSLYEVAQL SWGSALVRTP ADSALLYGMR DWFAKIALIL AFAAPAAAQL
LMPSISLQGR IIAYASLFLL LAPVAIYAIA RVPRRRVVAE AGIGWRREIR ASFGFPPLML
LFGVQFLNSF AFGSLTSLFV FFADAVLGLD AQSAVLLFAS FVGGALASPV WTFLARRFGK
PPMMIGMALL ISTLLVATLG QTPRGLAQAT LFSLTLGTGF VGLLFIHSML ADLIPRDAER
CGRSRAAFLF ALLNLMQKFG VAAAIAVSYA MLDLVGFDPR DGAVAARALH LLFALQPTAS
WAAMVVLLLL MRRDFARDHP LAIAAARK
|
|---|
| |