| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1404 |
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| Symbol | |
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| ID | 4081760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1458198 |
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| End bp | 1459868 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638009770 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_616451 |
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| Protein GI | 103486890 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.29775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATA TCGCAGCGAC TGCACCCGCG CACGGCCATG CCGATCACGC GCACGACCAT
GATCACGACA CTCCGGGCTT TTTCGTCCGC TGGTTCATGT CGACGAACCA CAAGGACATC
GGCACGCTCT ACCTGATCTT CGCGATCGTC GCGGGGATCG TGGGCGGCGT GCTGTCGGGC
ATGATGCGCC TCGAACTCGC CGAACCGGGC GTGCAATATC TGGGCGGCTG GGCCGAAATG
CTCGGCGGCG CGGGCGACGA GGTTGCGGGC AAGCATTTCT GGAACGTGAT GATCACCGCG
CACGGGCTGA TCATGGTCTT CTTCATGGTC ATGCCCGCGA TGATCGGCGG CTTCGGCAAC
TGGTTCGTGC CGCTGATGAT CGGCGCGCCC GACATGGCCT TCCCGCGCAT GAACAATGTC
TCCTTCTGGC TGACCTTCGT GGCGTTCGTC ATGCTCGTCG GATCGATGTT CGTGCCCGGC
GGCAGCGGCC TTGGCGCCGG CACCGGCTGG ACGGTCTATG CGCCGCTGTC GACCAGTGGT
TCGGCCGGGC CCGCGGTCGA CATGGCGATC TTCTCGCTTC ACCTTGCGGG CGCGGCGTCG
ATCCTCGGCG CGATCAACTT CATCACGACC ATCTTCAACA TGCGCGCGCC GGGCATGACG
CTGCACAAGA TGCCGCTGTT CGTATGGTCG GTGCTCGTCA CCGCCTTCCT GCTGCTGCTC
GCGCTTCCGG TGCTTGCCGC GGCGATCACG ATGCTGCTCA CCGACCGCAA TTTCGGCACC
ACCTTCTATG ATGCGGCGGG CGGCGGCGAT CCCGTGCTTT ACCAGCATCT CTTCTGGTTC
TTCGGCCACC CCGAAGTCTA TATCATGATC CTGCCGGGCT TCGGCATCGT CAGCCAGGTC
ATCTCGACCT TCAGCCGCAA GCCGGTGTTC GGCTATCTCG GCATGGCCTA TGCCATGGTG
GCGATCGGTG TCGTCGGCTT CATCGTGTGG GCGCACCACA TGTTCACCGT CGGCATGAGC
GTGAACCTGA AGATGTATTT CACCGCGGCG ACGATGGTGA TCGCGGTCCC GACCGGCATC
AAGATATTCA GTTGGATCGC GACGATGTGG GGCGGGTCGA TGAGCTTCAA GACCCCGATG
GTCTGGTCGC TGGGCTTCAT CTTCATGTTC ACCGTCGGCG GCGTGACCGG CGTGGTTCTC
GCCAATGGCG GCGTCGATAC CGCGCTTCAC GACACCTATT ATGTCGTCGC GCACTTCCAC
TATGTGCTTT CGCTCGGCGC GGTCTTCTCG CTCTTCGCCG GTTTCTATTA CTGGTTCCCG
AAGATGTCGG GCCGGATGTA CAACGAGGCG CTGGGCCAGC TGCACTTCTG GATCTTCTTC
ATCGGCGTGA ACGTGCTCTT CTTCCCCCAG CACTTCCTGG GTCAGCAGGG AATGCCGCGC
CGTTACCCCG ACTATCCCGA CGCCTATGCC TTCTGGCACC TCATCTCGTC CTGGGGCTAT
GTCATCATGG GCGTGGGCGT GCTGATCTTC TTCGCGAACA TTCTCTGGTC GCTGGTCGCG
GGGAAGAAGG CGGCGGACAA TCCGTGGGGC GAAGGCGCAA CGACGCTCGA ATGGACGCTG
TCGAGCCCGC CGCCGTTCCA CCAGTTCAAC GAACTGCCGC GTATCGCCTG A
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| Protein sequence | MTDIAATAPA HGHADHAHDH DHDTPGFFVR WFMSTNHKDI GTLYLIFAIV AGIVGGVLSG
MMRLELAEPG VQYLGGWAEM LGGAGDEVAG KHFWNVMITA HGLIMVFFMV MPAMIGGFGN
WFVPLMIGAP DMAFPRMNNV SFWLTFVAFV MLVGSMFVPG GSGLGAGTGW TVYAPLSTSG
SAGPAVDMAI FSLHLAGAAS ILGAINFITT IFNMRAPGMT LHKMPLFVWS VLVTAFLLLL
ALPVLAAAIT MLLTDRNFGT TFYDAAGGGD PVLYQHLFWF FGHPEVYIMI LPGFGIVSQV
ISTFSRKPVF GYLGMAYAMV AIGVVGFIVW AHHMFTVGMS VNLKMYFTAA TMVIAVPTGI
KIFSWIATMW GGSMSFKTPM VWSLGFIFMF TVGGVTGVVL ANGGVDTALH DTYYVVAHFH
YVLSLGAVFS LFAGFYYWFP KMSGRMYNEA LGQLHFWIFF IGVNVLFFPQ HFLGQQGMPR
RYPDYPDAYA FWHLISSWGY VIMGVGVLIF FANILWSLVA GKKAADNPWG EGATTLEWTL
SSPPPFHQFN ELPRIA
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