Gene Sala_1403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1403 
Symbol 
ID4081759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1457227 
End bp1458153 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content65% 
IMG OID638009769 
Productprotoheme IX farnesyltransferase 
Protein accessionYP_616450 
Protein GI103486889 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) 
TIGRFAM ID[TIGR01473] protoheme IX farnesyltransferase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGGAG TGATTATGGC GCAAAGCCTG ACCCATGATG CGATGACGCT CCCCGCCGAC 
TGGCGCGACC TGCTCGCGCT GACCAAGCCG CGCGTCATGT CGCTGGTGGT GTTCACCGCG
CTGTGCGGCC TGCTCGCGGC GCCGGGTGAC GTGCATCCGG TGCTGGGTTT TTCGTCGATC
CTCGCGATCG CGCTGGGGGC AGGGGCGTCG GGCGCGCTCA ACCAATGGTA TGAGGCGGGG
CTCGACGCCA GGATGAAGCG CACCGCAGGC CGCCCGCTGC CCGCCGGACG GCTCGATCCG
CAGACGGCGT TGCAGTTCGG GATCGGGCTC GCTGCCTTTT CGCTGTTCCT GATGCTCTTC
GCGTCGAACT GGCAGGCGAC CGTGCTGCTT GCGGGCTCGA TCCTCTTTTA CGTCGTCATC
TACACGATGT GGCTGAAGCC CCGGACGCCG CAGAATATCG TCATCGGCGG CGCAGCGGGG
GCCTTTCCGC CGCTGATCGG CTGGGTCGCG GCAACAGGAT CGATCGCGCC GCTGCCGGTG
CTGCTCTTTC TGCTCATCTT CCTGTGGACG CCGCCGCATT TCTGGGCGCT CGCGCTGTTC
GTCCGCTCGG ATTATGCCGC CGCCGGCATT CCGATGATGC CCGTCGTCGC GGGCGAAAAA
TCGACGCGGC GCCAGATCCT TTTTTATGCG CTGATTATGG CCGCGGCTGC GATCGCGCCC
TGGCCGCTGG GCTATACCGG TGCGCTTTAT GGCTGGACGG CGATTTTGCT CTCGGCAATC
TTTGTCCTGT TGTCGGTGCA GGTCGGCATC CGAACGACGG CCGAGGACGA CAGGATGCAG
CCCGAAAAGC GGCTTTTCGC TTTCTCGATC GCCTATCTTT TCATCCTGTT CGGCGCGGTG
GTGGCCGATC ATTGGTGGCC GCTATGA
 
Protein sequence
MAGVIMAQSL THDAMTLPAD WRDLLALTKP RVMSLVVFTA LCGLLAAPGD VHPVLGFSSI 
LAIALGAGAS GALNQWYEAG LDARMKRTAG RPLPAGRLDP QTALQFGIGL AAFSLFLMLF
ASNWQATVLL AGSILFYVVI YTMWLKPRTP QNIVIGGAAG AFPPLIGWVA ATGSIAPLPV
LLFLLIFLWT PPHFWALALF VRSDYAAAGI PMMPVVAGEK STRRQILFYA LIMAAAAIAP
WPLGYTGALY GWTAILLSAI FVLLSVQVGI RTTAEDDRMQ PEKRLFAFSI AYLFILFGAV
VADHWWPL